Detailed information on CNT30256779


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 2e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287289Avena sativaTriticum aestivum13.665095.74235forward
CNT30386360Avena sativaTriticum turgidum13.7248.7695.76236forward
CNT30346179Avena sativaEragrostis tef13.6643.9395.32235forward

Expression of CNT30256779

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MTILEDFFLLRVILEDLAPLVRNKQTIPTPCIGRSIQRTEAWFREIRWT*

>peptide 2 (55 aa)
LFIHHGSSRLLHRSRSLEDTGTSHLTTIRQEQIHDQTKRGHTDSSTGAYRRPPDL*

>peptide 3 (45 aa)
MHNYRSYKQQRGPTTKQVNFPSHIGHDCNIRHNLSATESEIRDRI*

>peptide 4 (83 aa)
LIHSSRFIKAAASQQKFGRHRYITLDDNTTGTNTRPDQTRTHRQLNWSIPKTTRLVNPETEAAPYWPPRRRSTKWRVDSFWML*

>peptide 5 (35 aa)
MKHNLSARESEIHDNTGGFFSFESNTGGFSSTRAE*

>peptide 6 (96 aa)
MIRRNLMTARAESIAIDQHNSARRSVLTTGNRSEIMDLRTIRRTIEQIERGIGNSRTLRRRTREPWLRSGRRFFGEIGEGTGLDLCGEESRGGGNL*

>peptide 7 (41 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICKYKA*

Sequence

>CNT30256779
CTTATTCATTCATCACGGTTCATCAAGGCTGCTGCATCGCAGCAGAAGTTTGGAAGACACAGGTACATCACACTTGACGACAATACGACAGGAACAAATA
CACGACCAGACCAAACGAGGACACACCGACAGCTCAACTGGAGCATACCGAAGACCACCAGACTTGTGAACCCAGAGACAGAAGCAGCTCCTTACTGGCC
ACCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGA
CGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGG
TGAGGGTCTTCACAAAGATCTGCATCTGTAAATACAAAGCATAGATCATAGTCAGGCACAGTAAAGGGGAATCAGCAGGACATAAATACATGAACAAACA
GGTAGACCAAAGAAAACTATGAATCAGCGTCTCAATAAATAGATGAACAAACTAATCAGGTAACCATGTTTTGAGCTGATCAAAGCTCTAGCTGAACTAA
AGATCATGTGAGACCTGATGATCGTTGCACAACTACAGATCTTAGAAGCAACTATGAGGTCAAAAGACTGAGCAGGTAGACTCCTGGCTAATCCACTCAG
AAATCATGGATAGGTGCAATATAACACCCAACCTGAGCGCTATCGAATAAGAAATCCAAGAGAATAGGAGTATTTAGCTCTACGCTAGCGGAATCAGCAG
CCATAGTTGCAATAAACTATGAAACACAACCTGAGCGCTAGAGAATCAGAAATCCATGACAATACTGGAGGATTTTTTTCTTTTGAGAGTAATACTGGAG
GATTTAGCTCCACTCGTGCGGAATAAGCAAACTATACCTACACCTTGTATCGGCAGATCTATTCAAAGAACAGAGGCATGGTTTAGGGAAATAAGATGGA
CATAAACACAGGAACCAGCAGGCCACGATACCAGAGAGACGAAATCAAAGTATGAACTAACGAACTTCTCAAAAAAAAAGATGGAGCACGCTACTGTAGT
AACCATGTTTTAGCAGATCAAAGTTCTTGCAGTTATGCTTAAGTAATCAGAGTCGATTGATGCACAACTACAGATCTTACAAGCAACAACGAGGTCCAAC
GACTAAGCAGGTAAATTTCCCCTCACATATCGGGCATGATTGCAATATCAGACACAACCTGAGCGCTACCGAATCAGAAATCCGAGATAGGATTTAGCTC
GGCCCGAGCGGAATCAGCAAACTATACCTACGGCTAGATAGATGAACCGGATCAACAGCAATCGCACCTCAAATCGGCAGATCTACTCGAGAACAGAGGC
ATGATCCGGAGGAATCTCATGACAGCCCGAGCCGAATCAATTGCAATCGATCAACACAACAGCGCACGCAGATCAGTCCTAACGACTGGCAATCGGTCGG
AAATAATGGATCTACGAACGATCCGCAGAACAATAGAACAAATAGAAAGAGGGATCGGAAACTCGCGTACCTTGAGGAGGAGGACGAGAGAGCCTTGGCT
TCGATCGGGTCGGCGATTCTTCGGCGAGATCGGGGAGGGGACTGGATTGGATTTGTGTGGAGAGGAGAGCCGAGGGGGTGGGAATTTATAGGCGGGGAGA
GCGTGGGGAAGGAGAGTCCC