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Detailed information on CNT30518747


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40592|RL10_TOBAC, E-value = 1e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372507Juglans regiaArabidopsis thaliana28.3943.0181.73197forward
CNT30499527Juglans regiaCoffea canephora34.8751.0583.06242forward
CNT3070749Juglans regiaQuercus suber33.1457.0782.61230forward
CNT30486603Juglans regiaOlea europaea23.3427.583.33162forward
CNT30711461Juglans regiaGlycine max35.0172.5485.19243forward
CNT30284964Juglans regiaTriticum aestivum15.5623.7981.48108forward
CNT30383518Juglans regiaTriticum turgidum23.6362.680.49164forward
CNT30568953Juglans regiaActinidia chinensis24.9333.3384.97173forward
CNT30135086Juglans regiaLolium perenne27.6732.5481.77192forward
CNT30610309Juglans regiaGossypium raimondii35.1638.4983.61244forward
CNT30105016Juglans regiaOryza longistaminata25.9430.6186.11180forward

Expression of CNT30518747

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTNCLNAKKSSCRIQYFTQESLPWTPHSKGSMAS*

>peptide 2 (47 aa)
GHSMCNRHIKISKFKCHRNRCSAVQQRFKDLTRVQRSKTETKSKIRQ*

>peptide 3 (44 aa)
MIFCRPGNLNLALLSASCAWVPFASLHLAYQFGAYLLQHKKASC*

>peptide 4 (89 aa)
MGAICIFAPRIPVWSLSAPAQESILLIRRTWKGWTLTRRWNASFPANLAMYLLHAMRAASRASLVTFSFSQETRWTQKGNSSTPFFFMPT

>peptide 5 (59 aa)
MERMDSHSKVECIFSCKLGHVLVARNACCFQGFTCDILFLPRNKMDTERKFINSFLFHAH

Sequence

>CNT30518747
GGGTCATAGCATGTGCAATAGACATATAAAGATATCCAAATTTAAATGTCATCGAAATAGATGTTCAGCAGTTCAACAAAGGTTCAAAGATTTAACGAGG
GTTCAAAGATCCAAAACGGAAACAAAGTCTAAAATAAGACAATAAGGTATTCATTAATTCTGATGACAAACTGTCTGAACGCCAAGAAATCAAGCTGCAG
GATTCAATACTTCACTCAAGAAAGCCTTCCCTGGACGCCTCACAGCAAGGGGTCCATGGCATCCTAAGAGCTTAGCATTCACTCCATCCGGCTGAATCCT
GTTCTCCTGTTTCCACTTGACATAGTCAGTTCTGCTGAACTTTGTGAAGCCCCATTTGCGGCTGACAATGATCTTCTGTCGTCCAGGAAACTTGAACTTG
GCCCTTCTGAGTGCTTCCTGTGCATGGGTGCCATTTGCATCTTTGCACCTCGCATACCAGTTTGGAGCCTATCTGCTCCAGCACAAGAAAGCATCTTGTT
GATACGCAGGACATGGAAAGGATGGACTCTCACTCGAAGGTGGAATGCATCTTTTCCTGCAAACTTGGCCATGTACTTGTTGCACGCAATGCGTGCTGCT
TCCAGGGCTTCACTTGTGACATTCTCTTTCTCCCAAGAAACAAGATGGACACAGAAAGGAAATTCATCAACTCCTTTCTTTTTCATGCCCACAT