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Detailed information on CNT3023971


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617683Populus trichocarpaSesamum indicum55.4856.2880.69233forward
CNT30273993Populus trichocarpaChenopodium quinoa46.1937.8986.6194forward
CNT30210007Populus trichocarpaHelianthus annuus27.6215.186.21116reverse complement

Expression of CNT3023971

Peptides detected in this lncRNA

>peptide 1 (93 aa)
RRAGAILLVRVPATIIQSDCLGLGLKIIPNRSKSYLAAPVCIISTAQQASPKVIGQIDPVRAQFIKLSTLEITNSAGLERPVSEDEEGGGARV*

>peptide 2 (81 aa)
KSRGHFVSKSTSNNHTVRLPRTRSKNNPEPIQIISGSTGMHHLNSTTGKPKSHRPNRSSASPVHQTINLGNHKLRRLRKTC*

>peptide 3 (54 aa)
MRKVAVRECRELVLVQGREMGGWCGEMRVAVFLVIIAMVCGGHGHTEFCLIIRHL

Sequence

>CNT3023971
CGAAGAGCAGGGGCCATTTTGTTAGTAAGAGTACCAGCAACAATCATACAGTCAGACTGCCTAGGACTCGGTCTAAAAATAATCCCGAACCGATCCAAAT
CATATCTGGCAGCACCGGTATGCATCATCTCAACAGCACAACAGGCAAGCCCAAAAGTCATAGGCCAAATAGATCCAGTGCGAGCCCAGTTCATCAAACT
ATCAACCTTGGAAATCACAAACTCCGCCGGCTTAGAAAGACCTGTTAGTGAGGATGAGGAAGGTGGCGGTGCGCGAGTGTAGGGAGCTGGTGTTGGTTCA
GGGGAGAGAGATGGGAGGGTGGTGTGGAGAGATGCGTGTGGCGGTGTTTCTGGTGATCATTGCCATGGTTTGTGGAGGACACGGACACACAGAGTTCTGT
TTGATTATACGACACCTAGC