Detailed information on CNT30252713


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501326Avena sativaCoffea canephora36.422.7187.11287reverse complement
CNT30201077Avena sativaPisum sativum35.7916.1485.82282forward
CNT30226086Avena sativaHordeum vulgare39.595.8795.83312reverse complement
CNT3087111Avena sativaVigna radiata18.438.2689.66145reverse complement
CNT30233290Avena sativaBrassica oleracea35.5313.7388.93280reverse complement
CNT30689058Avena sativaTriticum urartu28.5543.194.67225reverse complement

Expression of CNT30252713

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLSHGLQPFFYVLVFYMTDIRLDLLDIMEV*

>peptide 2 (48 aa)
RGERLRECCIGERRLRFAPSNVLCSIVVGRSNRRSRGRSAGSAAMAAW*

>peptide 3 (32 aa)
MSEVTRSLRLPSIRQSGTTRKRSGVRKPYDRW*

>peptide 4 (37 aa)
MSSAPSSLAGRIGGAVVGRLDQRQWRRGEQRGVERWR*

>peptide 5 (38 aa)
MPVGLELRKRVVKNVGGYQISETTIDPPERNNQKKKWS*

Sequence

>CNT30252713
CGCGGGGGGAGCGGTTGAGAGAATGCTGCATAGGCGAGCGGCGGCTGCGCTTTGCGCCTTCTAATGTCCTCTGCTCCATCGTCGTTGGCCGGTCGAATCG
GCGGAGCCGTGGTCGGTCGGCTGGATCAGCGGCAATGGCGGCGTGGTGAGCAGCGTGGTGTAGAGAGGTGGCGGTAGCTGCGGCGCTGTAGGCACGGTCG
GCTTCCTGGTCAACCGGCGCCAGCGGCTGGTGTTGAGGGCAGCATCTGTGTCGGCTCCCTTCTGCTCTGTCTACAGATCCCCTCCGTCGACCACCTCCGG
CTGTCATCAGCGCCTCTTCGCCGCAAAGGCCCAACACTTCGCGCAGCCGAGGCATGCCCAGAAGCATTAAGCTATGTGTCTGCAGGTTAATAAACTCTAA
GCATTAAGGTGAGAAGTGGGCGGCCTCACCCCTGCTGTGTGTCATTTCATGGCGGTCGGAGCATGCCAGTGGGCTTAGAATTAAGGAAGCGTGTTGTCAA
AAATGTCGGAGGTTACCAGATCTCTGAGACTACCATCGATCCGCCAGAGCGGAACAACCAGAAAAAGAAGTGGAGTTAGAAAGCCGTATGATAGGTGGTA
ACTATCTTGTACGGTTCAGGGGGTAAACAGCGTACTCTTGGGGAATATTAGGCTCTATCGAACATACATGGAATTGGAGGTAGCATTTTACTTATGTTAA
GTCATGGACTGCAGCCCTTTTTCTATGTGTTGGTGTTCTATATGACCGACATAAGACTCGACTTGTTAGATATTATGGAGGTTTAGTG