Detailed information on CNT30233290


BLAST search results

BLAST vs Swiss-Prot:
sp|P20113|NU4M_CHLRE, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533611Brassica oleraceaEucalyptus grandis10.7465.7785.39219forward
CNT30201077Brassica oleraceaPisum sativum28.0432.7490.56572reverse complement
CNT3087111Brassica oleraceaVigna radiata8.7747.2396.65179forward
CNT30252713Brassica oleraceaAvena sativa13.7335.5388.93280reverse complement
CNT30689058Brassica oleraceaTriticum urartu12.2547.8994.4250forward

Expression of CNT30233290

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGPLTSSYVLCGSREANEGKLFELTGELTFTLCLFD*

>peptide 2 (37 aa)
MLMLGDRNLLLRSTAVTPERKGSTRALVLRRGGRTNR*

>peptide 3 (93 aa)
MQRGRDDVTYYDHVQKSCPSARQYGTYHSRRSFMRSYRDIGRPKPFLSHRPSGSSSRLTNRSDGRKRRAPAPFPPPPILFLSFSRKRKKRRKD*

>peptide 4 (46 aa)
MFDRAKDFSRSTPITPRTVQDSYHLSYGFLTSLIFLVVPLCRSMVV*

>peptide 5 (68 aa)
MIESRLLVAKPLRNQSRPRLLYFSRAGEATAYTTAPLPRLASGKASTLLARKCFSLGQKASGKAKEKI*

>peptide 6 (42 aa)
MMLQSAVRSARGKLGLGWDRIVRSGPSGVIFWSSLPYPPPLC*

>peptide 7 (43 aa)
MCCAAPAKRMKGSSSSLRVSLRLLSASLIDRRAVKAPYLRFHS*

Sequence

>CNT30233290
AAATGGTAGAGAGATTCGGCATGGTGCTCACTAAACCTCCGTAATATCTAACAAGTCGAGTCTTATGTCGGTCATATAGAACACCAACACATAGAAAAAG
GGCTGAAGGAACCAGTCCATGACTTAACATCGGTAGAATACTACCTCCAATTCCCTGTATGTTCGATAGAGCGAAAGATTTCTCCCGGAGTACGCCGATT
ACCCCCCGAACCGTACAAGATAGTTACCACCTATCATACGGCTTTCTAACATCACTTATTTTTCTGGTCGTTCCGCTCTGTCGATCGATGGTAGTATAAG
AGATCTGTAACCCCCCCCGAAATTATTTACATAAGGGTTCCTGCTTCCTACCCATAGTTAGCATGTATCTCCCCGGGTCATACTTGAGTATCACATCGTA
GACCCCCGCCTAACTCTATCTTCCTTATCAGTGAACCGGAACTTAGTGCGTAGGTACTCTTCAATGCAGCGTGGACGAGACGACGTCACATACTACGATC
ACGTACAAAAGTCTTGCCCTTCAGCTCGGCAATATGGAACCTATCACTCCCGCCGTTCCTTTATGAGGTCTTATCGGGATATAGGTAGGCCCAAGCCTTT
CCTTTCCCACCGACCGAGCGGTAGTTCCTCACGGCTGACAAATAGGAGTGACGGCCGTAAAAGAAGGGCACCGGCCCCATTCCCCCCTCCCCCCATCCTC
TTTCTTTCCTTCTCGAGAAAGAGAAAGAAGAGAAGAAAGGATTGATTCTCTTCTTTCATGTGAGAACGGCCCTTTCTTGTATCGAAAGGTTTTTCGTGCT
ATACACCACGTTGAGAAAGTCCAACCTCCTATGGTACCGTACCTTTTTTTTTTTTTACCTCGAAAGGTCTGCAAGCCTTATGATGCTACAGTCGGCTGTC
CGCAGTGCAAGGGGTAAACTCGGACTCGGATGGGATAGGATTGTGCGTTCGGGCCCTTCGGGTGTCATATTTTGGTCGAGTTTACCGTACCCCCCGCCCT
TATGTTAATGTTAGGCGACCGTAATCTTTTGTTACGTTCCACCGCTGTTACGCCAGAAAGAAAAGGTTCCACACGAGCTCTCGTTCTGCGGCGTGGTGGC
AGGACCAATAGGTGATTGGCTCCGGGATAGGGGTTCCTCCGTACGGGTCATGCAAATACATAGGCCCCTTCCCTTATCTTTTGGATAAATGGGGTGCTTT
CCGATCTACGGTCCCTCGGAGCGAAGGGTTAGGCAGGTAGTATGGGCCCTCTGACTTCCAGCTATGTGCTGTGCGGCTCCCGCGAAGCGAATGAAGGGAA
GCTCTTCGAGCTTACGGGTGAGCTTACGTTTACTCTCTGCCTCTTTGATTGATAGGCGGGCGGTCAAAGCCCCCTACTTAAGATTCCATTCATAAGGGTA
ATTTTTTGTCATCGTCACGCTTTGGTTAGGCCGACTTATAAGGCAAGTTCTAGCTTCTATAGTGGCCCTTCCATTTCCACTTTGTTGTAGTTTGTATTTT
GACTGAATGAATATATCAAACCAAACAAAGGCGAGCAGTATAAGCCCTTCTCTGGCCCTGGGAAAAGCAGCGAACTAAGGTTTTGAACCCTTGCAACTAT
GATAGAAAGCCGTTTGCTTGTTGCCAAACCCCTTCGCAATCAAAGTAGGCCGCGACTCTTGTATTTTAGTCGGGCGGGGGAAGCTACCGCTTATACGACA
GCTCCGCTTCCTCGGCTGGCTTCTGGCAAAGCTTCTACTTTGCTTGCGCGAAAGTGCTTTTCGCTAGGTCAAAAAGCTTCCGGCAAAGCGAAAGAAAAGA
TCTGATCCAACAGAAATCCGCATATTGAGCGCAGCTGATATGCGGCTACAGCTAGGCGATCATATCATGCCATAAAAGACTTTGATATGTATAAAGAGAT
CCCCTATATATACAGATAGAATAGATGTTTATGGACAGACATTCCATTGATTCTGAGTTTTGGGGCTGAAAAAGCTCGTCGATCCAAACAAATGAATCAT
TCTTCTGGTATCTCTGCGCCCCCCGCCCCGAAACCGCCCC