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Detailed information on CNT30247497


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03878|GRP1_DAUCA, E-value = 8e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678707Avena sativaSetaria viridis17.9727.3983.33126forward
CNT30521923Avena sativaSetaria italica24.6829.6283.24173forward
CNT301423Avena sativaZea mays22.452.6889.17157forward
CNT30578989Avena sativaEchinochloa crusgalli23.8223.4987.43167forward

Expression of CNT30247497

Peptides detected in this lncRNA

>peptide 1 (50 aa)
STNGDANRTRPTHFLISFLGMIANGTVTRDTMETGTVARTPNGNHNHLKP*

>peptide 2 (41 aa)
EHERRCEQNQAHSFSHFISRDDSKRNSDTGHDGNRNSSTNT*

>peptide 3 (54 aa)
MLRPSRSWPFMPSMASRIDFSEEKACSRERSSVAQARPPTKQRYSTSAIPPTKP*

Sequence

>CNT30247497
CGAGCACGAACGGAGATGCGAACAGAACCAGGCCCACTCATTTTCTCATTTCATTTCTCGGGATGATAGCAAACGGAACAGTGACACGGGACACGATGGA
AACAGGAACAGTAGCACGAACACCTAATGGTAACCATAATCATCTCAAACCCTAAGCAATGGAGTGAGACCTAGGATACTCTGGAGCGATGACACGAAAC
ACATAAACGATAAGCTAGGATAACTGGCCACGAGGGGCCCCACCATTCAGTTCCTCCAGTTGCCGCCGGAGTCGCCGCCGCCGCCGTAGCCGCCGCCGCC
ACCACCGTAGCCTCCACCGCCCTCACGGCGCTGGTAGCCGCCGCCGCCACCTCCGTAGCCGCCGCCACCACCACCATAGCCGCCGCCGCCACCTCCGTAG
CCACGGCCGCCACCACGACCTCCGCCGCCGCCGCCGGAGCCGCGGGACTGGGCCTCGTTGACGGTGATGTTGCGGCCGTCGAGGTCCTGGCCGTTCATGC
CCTCGATGGCGTCGCGCATCGACTTCTCGGAGGAGAAGGCCTGCTCGAGGGAGCGGTCGTCAGTGGCCCAGGCGAGGCCGCCCACGAAGCAACGGTACTC
GACTTCCGCCATTCCTCCCACTAAACCCTAAACGAACCGGAACCGGGAACGAGGACTAGTGAGGGGGAGGAGAAGCCAGCCCACCTCTATGAAAGCACGA
G