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Detailed information on CNT30521923


BLAST search results

BLAST vs Swiss-Prot:
sp|Q99070|GRP2_SORBI, E-value = 6e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30247497Setaria italicaAvena sativa29.6224.6883.24173forward
CNT30446045Setaria italicaSaccharum spontaneum15.7523.1291.392forward
CNT3010293Setaria italicaZea mays31.1651.4184.62182forward
CNT30578989Setaria italicaEchinochloa crusgalli43.6635.8687.06255forward

Expression of CNT30521923

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MLRPSSSLPFMFSMASSIDCSVEKAKASWRDSLSVAHARPPTKQRYSTSAAAISLLLPLKNPKAEDLVRGGGVANPPL

>peptide 2 (46 aa)
SLFSSHFFSLRKQLGNGKHGEPTPNRTVTRDTKLGISNGNTMLIDS*

Sequence

>CNT30521923
GCTCACTCTTTTCTTCTCATTTCTTTTCATTGCGGAAACAACTTGGGAACGGTAAACATGGGGAACCAACACCTAATAGAACGGTAACACGGGACACTAA
ACTCGGGATCTCGAACGGTAACACGATGCTAATAGATAGCTAGGATAACTTGGCTGCTGCCTGCACGGGAGGGCCCACTCCGTCAGTTCCTCCAGTTGCC
ACCAGATTCGCCGCGGCTGCCGCCGTAGCCGCCACCGCCGCCGTAGCCGCCGTCGCGGCTGCGCCGCCGCCGCCACCGTAGCCGCCCTGGCGACCGCCGC
CGCCGTAGCCACCGCCGCCGCCGCCGCGGGACTGGGCCTGGTTGACGGTGATGTTGCGGCCGTCGAGCTCCTTGCCGTTCATGTTCTCGATGGCTTCGAG
CATCGACTGCTCAGTGGAGAAGGCGAAGGCAAGCTGGAGGGACTCGCTGTCGGTGGCCCATGCGAGGCCGCCGACGAAGCAACGGTACTCCACGTCCGCC
GCCGCCATCTCCCTTCTTCTCCCACTGAAAAACCCTAAAGCCGAAGACTTGGTAAGAGGGGGAGGAGTAGCCAACCCACCTCTG