Detailed information on CNT30578989


BLAST search results

BLAST vs Swiss-Prot:
sp|Q99070|GRP2_SORBI, E-value = 2e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678707Echinochloa crusgalliSetaria viridis29.445.4385.65209forward
CNT30521923Echinochloa crusgalliSetaria italica35.8643.6687.06255forward
CNT30247497Echinochloa crusgalliAvena sativa23.4923.8287.43167forward
CNT30446045Echinochloa crusgalliSaccharum spontaneum12.5222.3695.5189forward
CNT3010293Echinochloa crusgalliZea mays24.7549.7288.64176forward

Expression of CNT30578989

Peptides detected in this lncRNA

>peptide 1 (68 aa)
GQIKSIQCTEICEQKPCSLFSHFIHCGNNSRTIANSNIHPSRGNQHLIERVTRDTKLRGNSDRTVTRC*

>peptide 2 (63 aa)
MLRPSSSLPFMASMASFMDCSEAKACSRDSLLVAQARPPTKQRYSTSAAAIFLPTKTLEPRTL*

>peptide 3 (36 aa)
WANQINSVHRDMRTKTLLTLFSFHSLRKQLTNHSEQ*

>peptide 4 (32 aa)
GKSNQFSAQRYANKNLAHSFLISFIAETTHEP*

>peptide 5 (30 aa)
MLEGLVVGGPGEAADEAAVLHVRRRHLPSH*

Sequence

>CNT30578989
TGGGCAAATCAAATCAATTCAGTGCACAGAGATATGCGAACAAAAACCTTGCTCACTCTTTTCTCATTTCATTCATTGCGGAAACAACTCACGAACCATA
GCGAACAGTAACATTCATCCATCACGGGGGAACCAACACCTAATCGAACGGGTAACACGGGACACTAAACTCAGGGGTAACTCGGACCGAACGGTAACAC
GATGCTAATAGATAGCTAGGATAACTTGGCCGCCGCCACGGGAGGGCCCACCCTTCAGTTCCTCCAGTTGCCACCGGAGTCACCGCGGCTGCCCCCGTAG
CCACCACCACCGTAGCCGCCCTCACGGCGACCGCCGCCGCCGTAGCCGCCGCCACCTCCTCCATAGCCGCCGCCGCCGTAGCTGCCGCCATCGCGACGAC
CGCCGTAGCCGCCACCGCCGCCGCCGTAGCCGCCGCCGCCGCCGTAGCCGCCGCCACCTCCGCCGCGGGACTGGGCCTGGTTGACGGTGATGTTGCGGCC
GTCGAGCTCCTTGCCGTTCATGGCCTCGATGGCGTCGTTCATGGACTGCTCCGAGGCGAAGGCATGCTCGAGGGACTCGTTGTTGGTGGCCCAGGCGAGG
CCGCCGACGAAGCAGCGGTACTCCACGTCCGCCGCCGCCATCTTCCTTCCCACTAAAACCCTAGAACCGAGGACTTTGTAAGAGGGGGAGGAGAAGCCAA
CCCGCCTCGAG