Detailed information on CNT30678051


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53RB0|LOX4_ORYSJ, E-value = 4e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692296Setaria viridisOryza sativa32.2710.3685.1981forward
CNT30224984Setaria viridisHordeum vulgare36.6534.7284.7892forward
CNT30591783Setaria viridisMusa acuminata514082.81128forward
CNT30247013Setaria viridisAvena sativa47.4115.9981.51119forward
CNT30666056Setaria viridisTriticum dicoccoides80.8821.3781.77203forward
CNT30344056Setaria viridisEragrostis tef80.8821.8581.77203forward
CNT30593881Setaria viridisEragrostis curvula5150.288.28128forward

Expression of CNT30678051

Peptides detected in this lncRNA

>peptide 1 (78 aa)
LPEVDGRVQRRRHPDDGRASPGQLLHCVHLGPPVPVLEVTVGLLAHLLPPGLQLHVALELTVTRVVDVEVWHEMIMVV*

>peptide 2 (64 aa)
CPKLTAACSADATQMMVVQVLASCCTVSILGHQSLSLRSPWASSRTSFHQACSSTSRWSSLSLG*

Sequence

>CNT30678051
ACTGCCCGAAGTTGACGGCCGCGTGCAGCGCCGACGCCACCCAGATGATGGTCGTGCAAGTCCTGGCCAGCTGCTGCACTGTGTCCATCTTGGGCCACCA
GTCCCTGTCCTTGAGGTCACCGTGGGCCTCCTCGCGCACCTCCTTCCACCAGGCCTGCAGCTCCACGTCGCGCTGGAGCTCACTGTCACTAGGGTAGTAG
ATGTCGAGGTATGGCATGAAATGATCATGGTGGTCTAGGATGAAGAGCTTG