CANTATAdb - search

Detailed information on CNT30242628

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30441445	Avena sativa	Aegilops tauschii	59.21	62.63	92.92	466	forward
CNT30142112	Avena sativa	Lolium perenne	59.97	60.05	95.34	472	forward
CNT30346176	Avena sativa	Eragrostis tef	59.21	25.62	92.27	466	forward
CNT30576843	Avena sativa	Oryza barthii	59.34	68.08	92.72	467	forward

Expression of CNT30242628

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWIFAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTRWRVDSFWML*

>peptide 2 (99 aa)
TRHQCKKYKNPKEQDTKNQCILEQEHSSKEICRHKDLTLKFRVHLFIHHGSSRLLHRSRSLQDTGTSHLTTIRQEQIHDQTKRGHTDSSTGAYRRPPDL*

>peptide 3 (43 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICI

Sequence

>CNT30242628
ACGAGACACCAATGCAAGAAATATAAAAATCCAAAAGAACAAGATACTAAAAACCAATGCATATTAGAACAAGAACACAGCAGCAAAGAGATATGCAGAC
ACAAGGATTTGACTCTTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCATCAAGGCTGCTGCATCGCAGCAGAAGTTTGCAAGACACAGGTACATC
ACACTTGACGACAATACGACAGGAACAAATACACGACCAGACCAAACGAGGACACACCGACAGCTCAACTGGAGCATACCGAAGACCACCAGACTTGTGA
ACCCAGAGACAGAAGCAGCCCCTTACTGGCCACCACGAAGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCC
ATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAT
GACTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGCCACCACGGAGACGTAGCACAAGGTGGAGGGTGGACTCCTTCT
GGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT
GGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTG