Detailed information on CNT30346176


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 2e-90

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30305143Eragrostis tefTriticum aestivum25.6768.2791.86467forward
CNT30242628Eragrostis tefAvena sativa25.6259.2192.27466forward
CNT30668947Eragrostis tefTriticum dicoccoides25.6253.8191.85466forward
CNT3067610Eragrostis tefLeersia perrieri27.9828.6190.96509forward
CNT30576670Eragrostis tefOryza barthii28.0460.9390.98510forward
CNT30557382Eragrostis tefPanicum hallii27.4970.4290.8500forward

Expression of CNT30346176

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MNLTNDLPHAHEPTQSMETASLINQFTGRANRRTPIASEP*

>peptide 2 (52 aa)
MRRCWSGGIPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICICNHLGTRG*

>peptide 3 (53 aa)
MPSLSWIFAFTLSMVSEDSTSRVMVFPVSVLTKICIPPRRRRTRWRVDSFWML*

>peptide 4 (64 aa)
MIWTHHHHHRVDQRDHTCEPRTTAAPGRGLTGHHGDEAPGGEWIPSGCCSPPGYGHPPAACRQR*

>peptide 5 (84 aa)
MFSSQPEHLHLYRQIDYMILICRTRTGKGMAADHDLINPNQQMHNEDGKEFHTAEGDRELAHTLGGWGRASSLRSKGDFARGTGL

Sequence

>CNT30346176
GTTAAACTGTACGTAGCAGTATCGAGGGCAGAATAAACTGCAAAATCTAAGGACAGATTAAACTGTAAAATCAAGAAGCACGAAGTGACAGCAGAATTCA
CACGAAGTTCAGGGTTCACTTATTCATCACCGTTAACAAGCTGCAGCACCGCAGCAAGTGTTTCACAAGCACAAACCAACGACACAGGACTCACAATAAC
ACGACAGACATCATTCAACCAACACATGATCTGGACACACCATCACCACCATCGGGTAGACCAGAGAGACCATACTTGTGAACCCAGGACAACAGCAGCT
CCTGGCCGAGGACTTACTGGCCACCACGGAGACGAAGCACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCCGCCAGGGTACGGCCATCCTCCAG
CTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCAGAAGACTCCACC
TCCAGGGTGATGGTCTTCCCAGTGAGCGTCTTGACGAAGATCTGCATACCACCACGAAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGT
AGTCAGCGAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC
GTTGTCAATGGTGTCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCATCTGCAATCATTTAGGCACCAGAGGA
TAGATTAGACCACCATAAACAATCAGCTATTAAGTAAAACTTGTACACTATTACAGCATAAAATCGATCGGTTCTAATTTCTGAACATCACTGTAACACA
GACAAACTGCAGGTGTGCCCAAGTACATATAACACTGCTAAATTCAATTTAAATCCAACACACAAAGCATCTGCTGTAAGCCTACTAATCATGATGCATG
ATGATGTATAGGTGAGTACAGCTATACAAAGACAGGTTTAATAGTATTATGTCAAATTCAGGACGCTTAGGAAAACAAAATTGAACCAATCAAAAACTAC
AGCACATGGCCTAGCAGAATACAACAATCATAGGACTCTCAGGTAAACTGTAGTACAATCAAATTTAACCGATCTGTGACTATAACTGACTAAACAACTG
TGTACGGGTAAACTACAAGAGCCATGATAAATCAACAGTTAACTAATTGGAACTACCCAATCCGCCAGGCTTGGGTATAGAACAAAGACTCACCAATCTA
ACAAAGAATTCTACAAGTTTATCAGCAGTCAAAGGCATCCCAATTCTTATCTGTATACCACCTAGATGAATCTAACCAACGACCTACCACATGCGCATGA
ACCAACACAATCCATGGAGACAGCAAGCCTAATCAACCAGTTTACGGGTCGTGCGAACCGCCGCACGCCAATAGCATCGGAACCCTAGCACGGCGATCCG
GCATGAACTAACAAAACCACCTGATCGCACAGAGAGCAGCACGGATCTGCTCATCAACACAACATGTTCTCATCACAACCCGAACATCTACACCTCTACC
GGCAAATCGATTACATGATACTGATTTGCAGAACACGAACAGGTAAAGGCATGGCAGCAGATCACGACCTAATCAACCCTAACCAGCAGATGCACAACGA
AGACGGAAAGGAATTCCATACGGCAGAGGGCGATCGAGAACTCGCGCATACCTTGGGAGGATGGGGGCGGGCTTCTTCGCTTCGATCGAAAGGCGATTTC
GCTCGCGGGACTGGATTGG