CANTATAdb - search

Detailed information on CNT30142112

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-87

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30242628	Lolium perenne	Avena sativa	60.05	59.97	95.34	472	forward

Expression of CNT30142112

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MQKKKKTGSRYKTTNKYSRSRTHQQRDMQTQQNLKLSSGFTYSFITVQFIATAPRQMFVDKYDITLDNKTAGKEDNRPLDQNN*

>peptide 2 (53 aa)
MPSLSWIFAFTLSMVSDDSTSRVMVLPVRVLTKICIPPRRRSTRWRVDSFWML*

>peptide 3 (45 aa)
MRRCWSGGIPSLSWIFALTLSMVSEDSTSRVMVLPVRVFTKICICK

>peptide 4 (34 aa)
KCKRKKKLDPDIRLQTSTVDQEHISNGICRHNRI*

Sequence

>CNT30142112
AAATGCAAAAGAAAAAAAAAACTGGATCCAGATATAAGACTACAAACAAGTACAGTAGATCAAGAACACATCAGCAACGGGATATGCAGACACAACAGAA
TTTGAAACTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCAATTCATAGCTACTGCACCACGGCAGATGTTTGTAGACAAATATGATATCACACTA
GACAACAAAACGGCAGGAAAAGAAGATAATCGACCACTCGACCAGAACAACTGACATCCCCAGTGGAGGACACCGAAGACCCCACAGTTGAGAACCCTCA
GAGATTGAATCAGCTCCTTACTGGCCACCACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCT
CCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGACGACTC
CACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATG
TTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCT
TGACATTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATCTGTAAA