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Detailed information on CNT30236385


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694441Brassica oleraceaOryza sativa4.4644.6580.99121reverse complement
CNT30671235Brassica oleraceaSetaria viridis4.1729.2790.27113forward
CNT30518402Brassica oleraceaJuglans regia7.1250.3991.71193forward
CNT30273023Brassica oleraceaChenopodium quinoa4.3524.7486.44118forward
CNT30199883Brassica oleraceaPisum sativum10.1837.2588.41276forward
CNT30146271Brassica oleraceaMedicago truncatula4.3123.1284.62117forward
CNT30264063Brassica oleraceaBrassica rapa4.0228.8499.08109forward
CNT30596717Brassica oleraceaOryza meridionalis8.9226.0287.19242forward

Expression of CNT30236385

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MEINVSVRIALPQGWLISQPGLKRVKKNINRMTFSLSVI*

>peptide 2 (57 aa)
MNSEARFLVLEFEQTEFHWYNSGPQIYFYLIHFRTHHIHLNNTNLILIFIYGPRGAV*

>peptide 3 (31 aa)
MLCINILFNLVNLYYKFFVYFGVSNHPRVFT*

>peptide 4 (42 aa)
MGAYSESESWGVLPDNFYKFQAPINLLFLLSYVMHKYPFQFG*

>peptide 5 (34 aa)
MLPSTDKCNDYQKRNNPLFFFLSPPTFFLKKKEE*

Sequence

>CNT30236385
TAATAGATTTAGATAAGAAGCAACATAAAATAAACCAAATTTGATATCGGAATATTCAGTTTGATAACCTGCTATTAATTCTTCTTCCGCTTCTGGTAAA
TCAAAAGGTAACATCTCGCATTCTGCTAGGGAAGAAATTAGAAAAATTATAAAACCTATAGGTTGACGCCACAGATCCCATCCCCAAAAACCATATTTTG
ATTGTGCCTCAACTATATCAACTGTACTTAAACTGTTAGATAATCCTAGTCGATGATAACATTACTATTCTCACCGCTATTACAAAACCGTACATGAGGT
CTTCGCCTCATACGGCTCCTCCGGGGCCGTAAATAAATATAAGGACCAGATTAGTATTATTTAGATGGATATGATGTGTTCTAAAATGGATTAAATAGAA
ATATATCTGGGGTCCCGAATTATACCAATGGAATTCTGTCTGCTCAAATTCTAAAACTAAAAAACGCGCTTCGGAATTCATCTCATCCTTTACAAATTTT
AATTTCTATTTGTTGAGTAATAACTTAATCCTTTAATAAAGCACCCCTTGTAAAAATAAACCTAGGTTTTTCAGCCCGTCGTGTTTTTCAATTACGAAAA
AGAATTAAACATCCTATTAGTTTCTTATTCATGATAGAAATTCTATTTTATTTTTGAAACCTATAAAAAAAAATATACTTGTTTCGTTCCTATTCTTCTT
TCTTTTTTAGAAAAAAAGTAGGTGGACTTAAAAAAAAAAATAAAGGATTATTTCGTTTCTGATAGTCATTACATTTATCGGTGGATGGGAGCATACTCTG
AATCGGAATCTTGGGGAGTACTGCCTGATAATTTCTACAAATTTCAAGCCCCAATTAACCTTCTTTTTTTGTTATCTTATGTTATGCATAAATATCCTTT
TCAATTTGGTTAATCTCTATTACAAATTCTTTGTGTATTTTGGTGTTTCTAACCATCCACGCGTTTTTACCTAATTGCCGATCACTTTGTAATATATGTA
TATGTATATGTATAGTAATTTATATAACTGATAGTGAAAACGTCATACGGTTAATATTTTTTTTAACCCGCTTCAAGCCCGGCTGACTAATCAACCAACC
TTGGGGTAAAGCGATTCTTACGCTTACGTTTATTTCCATTTAACCTTTGTACATAGGAAATGAGACTTAATTTTTCTTTTTACTGCTAATTTCTGAGCAG
TTTTTTTTCACTCATATATAACTATCAAATTCCTTTTATAAAAAAAAAAATGAAAAAAAAAAAAGGAATATATATATATATTTATCTTTCGAGTTTATCT
TAATAAAAGGAATTTGATAGTTATATATGAGTGAAAAAAAACTGCTCAGAAATTAGCAGTAAAAAGAAAAATTAAGTCTCATTTCCTATGTACAAAGGTT
AAATGGAAATAAACGTAAGCGTAAGAATCGCTTTACCCCAAGGTTGGTTGATTAGTCAGCCGGGCTTGAAGCGGGTTAAAAAAAATATTAACCGTATGAC
GTTTTCACTATCAGTTATATAAATTACTATACATATACATATACATATATTACAAAGTGATCGGCAATTAGGTAAAAACGCGTGGATGGTTAGAAACACC
AAAATACACAAAGAATTTGTAATAGAGATTAACCAAATTGAAAAGGATATTTATGCATAACATAAGATAACAAAAAAAGAAGGTTAATTGGGGCTTGAAA
TTTGTAGAAATTATCAGGCAGTACTCCCCAAGATTCCGATTCAGAGTATGCTCCCATCCACCGATAAATGTAATGACTATCAGAAACGAAATAATCCTTT
ATTTTTTTTTTTAAGTCCACCTACTTTTTTTCTAAAAAAGAAAGAAGAATAGGAACGAAACAAGTATATTTTTTTTTATAGGTTTCAAAAATAAAATAGA
ATTTCTATCATGAATAAGAAACTAATAGGATGTTTAATTCTTTTTCGTAATTGAAAAACACGACGGGCTGAAAAACCTAGGTTTATTTTTACAAGGGGTG
CTTTATTAAAGGATTAAGTTATTACTCAACAAATAGAAATTAAAATTTGTAAAGGATGAGATGAATTCCGAAGCGCGTTTTTTAGTTTTAGAATTTGAGC
AGACAGAATTCCATTGGTATAATTCGGGACCCCAGATATATTTCTATTTAATCCATTTTAGAACACATCATATCCATCTAAATAATACTAATCTGATCCT
TATATTTATTTACGGCCCCCGAGGAGCCGTATGAGGCGAAAACCTCATGTACGGTTTTGTAATAGCGGTGAGAATAGTAATGTTATCATCGACTAGGATT
ATCTAACAGTTTAAGTACAGTTGATATAGTTGACGCCACAAATTCCATCCCCAAAAACCATATTTTGATTGTGCCTCAACTATATCAACTGTACTTAAAC
TGTTAGATAATCCTAGTCGATGATAACATTACTATTCTCACCGCTATTACAAAACCGTACATGAGGTTTTCGCCTCATACGGCTCCTCGGGGGCCGTAAA
TAAATATAAGGATCAGATTAGTATTATTTAGATGGATATGATGTGTTCTAAAATGGATTAAATAGAAATATATCTGGGGTCCCGAATTATACCAATGGAA
TTCTGTCTGCTCAAATTCTAAAACTAAAAAACGCGCTTCGGAATTCATCTCATCCTTTACAAATTTTAATTTCTATTTGTTGAGTAATAACTTAATCCTT
TAATAAAGCACC