Detailed information on CNT30518402


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1KXQ8|NU1C_HELAN, E-value = 4e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671235Juglans regiaSetaria viridis29.529.2785.84113forward
CNT3020678Juglans regiaCitrullus lanatus32.3832.1291.94124forward
CNT30406240Juglans regiaBeta vulgaris45.1766.891.33173forward
CNT30201817Juglans regiaPisum sativum60.3137.3893.94231forward
CNT30712407Juglans regiaGlycine max65.0120.0890.36249forward
CNT3096636Juglans regiaSolanum tuberosum31.595.5488.43121forward
CNT30569544Juglans regiaActinidia chinensis65.016.7494.38249forward
CNT30236385Juglans regiaBrassica oleracea50.397.1291.71193forward
CNT30608772Juglans regiaGossypium raimondii65.0179.393.57249forward
CNT30689544Juglans regiaTriticum urartu51.173.1487.24196forward
CNT30360555Juglans regiaLactuca sativa65.0122.7491.97249forward
CNT30151942Juglans regiaPrunus persica65.0110.6192.37249forward
CNT3035415Juglans regiaCucumis melo63.4536.3893.42243forward
CNT30148081Juglans regiaBrachypodium distachyon65.0124.5890.36249forward
CNT30116024Juglans regiaOryza nivara55.3547.3286.79212forward

Expression of CNT30518402

Peptides detected in this lncRNA

>peptide 1 (32 aa)
IRFDNLLLILLLLLVNQKVISHILLGKKLEKR*

Sequence

>CNT30518402
TATTCGGTTTGATAACCTGCTACTAATTCTTCTTCTGCTTCTGGTAAATCAAAAGGTAATCTCTCACATTCTGCTAGGGAAGAAATTAGAAAAACGATAA
ACTCTATAGGTTGACGCCACAAATTCCACCCCAAAAAATCATATTTTGATTGAGCCTCAACTATATCAACTGTACTTAAACTGTTAGATAATCATAATAT
TGATAATACACGTAGAGTTAATGGTATTTCATAACTAATCGATTGAGCATATCCTGACATAAGAAGTCTAATGGAAGCAATACTTGAAACCGCAATCCAT
AAAAAAACTTCAATATTGAGATCGGTTAAAACAAGACGATAGTCAAAAGGAATTACTAAATAATTTAGCAAAATGGATACGAC