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Detailed information on CNT30596717


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENA2|NU1C_ORYNI, E-value = 3e-157

BLAST vs NONCODE:
NONMEST004538, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694441Oryza meridionalisOryza sativa13.3345.7685.48124reverse complement
CNT30671235Oryza meridionalisSetaria viridis13.2331.8795.12123forward
CNT30531354Oryza meridionalisEucalyptus grandis73.2325.5285.02681forward
CNT30317759Oryza meridionalisCorylus avellana83.7638.2184.85779forward
CNT30518502Oryza meridionalisJuglans regia26.6764.7587.9248forward
CNT30615574Oryza meridionalisSesamum indicum83.6652.2585.09778forward
CNT3020678Oryza meridionalisCitrullus lanatus12.0429.0285.71112forward
CNT30406240Oryza meridionalisBeta vulgaris27.3198.0785.04254forward
CNT30201817Oryza meridionalisPisum sativum35.1652.9186.24327forward
CNT30712407Oryza meridionalisGlycine max83.8762.981.67780forward
CNT30569544Oryza meridionalisActinidia chinensis57.114.3785.88531forward
CNT30589541Oryza meridionalisMusa acuminata32.0437.284.56298forward
CNT30236385Oryza meridionalisBrassica oleracea26.028.9287.19242forward
CNT30264063Oryza meridionalisBrassica rapa11.2927.7891.43105forward
CNT30608772Oryza meridionalisGossypium raimondii33.5599.3686.86312forward
CNT30215974Oryza meridionalisHelianthus annuus41.2952.4687.5384forward
CNT30689544Oryza meridionalisTriticum urartu73.871195.34687forward
CNT30360555Oryza meridionalisLactuca sativa79.7867.7684.37742forward
CNT30151942Oryza meridionalisPrunus persica74.1929.483.48690forward
CNT3057989Oryza meridionalisAmborella trichopoda46.6782.6788.94434forward
CNT3035415Oryza meridionalisCucumis melo55.0576.6585.35512forward
CNT30148081Oryza meridionalisBrachypodium distachyon59.2554.3995.1551forward
CNT30116024Oryza meridionalisOryza nivara42.989.0698.5399forward
CNT30723989Oryza meridionalisLupinus angustifolius25.5917.0785.71238forward

Expression of CNT30596717

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAIHKKTPILRSAKTKRYPKGITKKLNKIDM

>peptide 2 (33 aa)
CCAYCLLTITHEPSYHREHIRNIYEKGMFLSLV*

>peptide 3 (41 aa)
MNPVTIGNIFEISMKKVCFFLLFERTFVLKIFLLLLYYLIL*

Sequence

>CNT30596717
CTTGCTGCGCGTATTGTTTGTTGACCATAACTCATGAACCCAGTTACCATAGGGAACATATTCGAAATATCTATGAAAAAGGTATGTTTCTTTCTCTTGT
TTGAGAGAACTTTTGTGTTGAAAATATTCTTACTGTTATTGTATTATCTTATTTTATAGTGAAACAAGTTGGGAAGAAGTTGTTAATAAGAGATTGCCCA
GGGAAATAGGTAAAAGAAATTTCCATCCAAGATTTAATAACTGATCCATTCTCATCCTGGGTAAAGTCCATCTTATTGTGATAGAAATGAAGAGAAATAA
ATAAGCTTTAGTTAATGTAATAAAGATACTCATTGTCATTTCTAGAATTCCAACCATTTTATTCATTTGGAAAAATCCAAAAAAGGATATATAGGGAATA
GACAAATTCCACCCGCCTAAGTAGAGAACTGTTACAAATAAAGAGGAAACTAATAAATTTAGGTAAGAAACAAGATAAAATAAACCATATTTGATACCAG
AATATTCGGTTTGATAACCTGCTACTAATTCTTCCTCCGCTTCTGGTAAATCAAAGGGTAATCTTTCACATTCCGCCAAAGAAGAAATTAGAAAAACCAG
AAAACCTATAGGCTGACGCCAAAGATTCCATCCAAAAAAACCATATTTTGACTGTGCTTCAACTATATCAACTGTACTTGAACTGTTGGATAGTAGAGAT
ATTGCTAGTACACAAAAAGTTAATGGGATTTCATAACTAATAGATTGAGCGGCAGCTCGTAGACCACCTGAAAAAGAATATTTATTATTTGAGCTATATC
CTGCCATAAGAAGACCAATAGGAGCAATACTTGAAATGGCAATCCATAAAAAAACACCAATACTAAGATCCGCTAAAACAAAGCGATATCCCAAAGGAAT
AACTAAAAAACTTAATAAAATTGATATGAC