CANTATAdb - search

Detailed information on CNT30199883

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9BBN9|NU1C_LOTJA, E-value = 2e-91

BLAST vs NONCODE:
NONMEST004538, E-value = 2e-50

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30671235	Pisum sativum	Setaria viridis	15.25	29.27	86.73	113	forward
CNT3020678	Pisum sativum	Citrullus lanatus	20.65	39.64	88.89	153	forward
CNT30236385	Pisum sativum	Brassica oleracea	37.25	10.18	88.41	276	forward
CNT30264063	Pisum sativum	Brassica rapa	14.04	27.51	88.46	104	forward
CNT30152193	Pisum sativum	Prunus persica	65.18	11.05	87.58	483	forward
CNT3057987	Pisum sativum	Amborella trichopoda	46.56	18.5	85.51	345	forward

Expression of CNT30199883

Peptides detected in this lncRNA

>peptide 1 (32 aa)
KTIETKLLIIDYLQKSVKEISIQDLIIDPFLA*

>peptide 2 (53 aa)
MKKLKGLNRKQRKINQIEYLNILFDNQLLILLLLLVNQKVIFHILLAKKLEKR*

Sequence

>CNT30199883
CGAAAACAATTGAGACGAAGTTGTTAATAATAGATTACCTACAGAAATCGGTAAAAGAAATTTCCATCCAAGATTTAATAATTGATCCATTCTTAGCCTA
GGCAAAGACCATCTTGTTATGATAGAAATGAATAAGAAAAAATAGCTTTTAGCTAATGTAATAAAGAGATCACTTGTAGTTCCAAAAACTCCGTATGTTT
TATTTATTTCAAAAAATTCAGAAACAAATATGTACGGAATAGAAATATTTGAACCGCACTTAGCCTAGGCAAAGACCATCTTGTTATGATAGAAACGAAT
AAGAAAAAATAGCTTTTAGCTAATGTAATAAAGAGATCACTTGTAGTTCCAAAAACTCCGTATGTTTTATTTATTTCAAAAAATTTAGAAACAAATATGT
ACGGAATAGAAATATTTGAACCGCCCAAGTAAAGAACTGTTACAAATAATGAAGAAATTAAAAGGTTTAAATAGGAAGCAACGTAAAATAAACCAAATCG
AATACCTGAATATTTTGTTTGATAACCAGCTACTAATTCTTCTTCTGCTTCTGGTAAATCAAAAGGTAATCTTTCACATTCTGCTAGCGAAGAAATTAGA
AAAACGATGAAACCCATAGGTTGACGCCACAAATTCCAACCCCAAAAACCATATTTTGATTGCGCATCAACTATATCAACTGTACTTAAACTGTTAGATA
ATCCTAGTCGGTGATAACATTACTGTTCCCATCTCTATTAC