Detailed information on CNT30235538


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373911Brassica oleraceaArabidopsis thaliana90.2692.9890.29278reverse complement
CNT30541034Brassica oleraceaBrassica napus10010099.03308forward
CNT3060682Brassica oleraceaArabidopsis lyrata100.32100.3287.06309forward
CNT30261151Brassica oleraceaBrassica rapa10010093.51308forward

Expression of CNT30235538

Peptides detected in this lncRNA

>peptide 1 (62 aa)
SSSVTRACDPCGDYKVMGRWVDLIGPGSDWALFWPAHTKLGVEAWFLSEGLGVVFLRVGETA*

Sequence

>CNT30235538
GTCGAGTTCAGTAACGCGGGCTTGTGATCCATGTGGAGACTATAAAGTGATGGGACGTTGGGTCGATCTCATTGGGCCGGGTTCGGATTGGGCTTTATTC
TGGCCTGCCCATACCAAGTTGGGAGTCGAGGCATGGTTCTTGAGCGAAGGCTTGGGAGTTGTGTTTCTTAGAGTGGGGGAGACTGCGTGAGGCTGGTTTC
ACAGAACAGCGTTTCACCTCCCTCTCTTGACGGTGGAAGGATAACGGGCCATTGCCTTCCGAGCCCACTATGACCCAATAAGCCGTTTCCGATTGAACCA
TCACTTTT