Detailed information on CNT3060682


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373911Arabidopsis lyrataArabidopsis thaliana95.4598.3392.52294reverse complement
CNT30379424Arabidopsis lyrataManihot esculenta21.4321.7886.3666forward
CNT30541034Arabidopsis lyrataBrassica napus100.32100.3286.73309forward
CNT30235538Arabidopsis lyrataBrassica oleracea100.32100.3287.06309forward
CNT30261151Arabidopsis lyrataBrassica rapa100.32100.3286.08309forward
CNT30615169Arabidopsis lyrataArabis alpina94.1694.4685.17290reverse complement
CNT30479687Arabidopsis lyrataArabidopsis halleri100.3299.6890.94309forward
CNT3050536Arabidopsis lyrataCucumis sativus48.749.1882150forward

Expression of CNT3060682

Peptides detected in this lncRNA

>peptide 1 (29 aa)
SSSVTRACDPSGDNRVMGRWVDLIGPGSG*

>peptide 2 (70 aa)
MFWPAHSKLGVEVWTLSEGLDLMSSRVGGDCMRLVSKSIVHLPLLTVEGLQAIAFRTHYDPISRLRLDHHF

Sequence

>CNT3060682
GTCGAGCTCAGTAACTCGGGCTTGTGATCCAAGTGGAGACAATAGGGTGATGGGACGTTGGGTCGATCTTATTGGGCCGGGTTCGGGGTAGGCTATGTTC
TGGCCCGCCCATTCCAAGTTGGGAGTCGAGGTATGGACTTTGAGCGAAGGCTTGGATCTCATGTCTTCTAGAGTGGGGGGAGACTGCATGAGGCTGGTTT
CAAAGAGCATCGTCCACCTCCCGCTCTTGACGGTGGAAGGATTACAGGCCATTGCCTTCCGAACCCACTATGACCCAATAAGCCGACTCCGATTGGACCA
TCACTTTT