CANTATAdb - search

Detailed information on CNT30591037

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-99

BLAST vs NONCODE:
NONGMAT000502, E-value = 1e-36

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30235498	Musa acuminata	Brassica oleracea	33.33	45.78	85.26	407	forward

Expression of CNT30591037

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSRVMVFPVSVLTKICICIREDKELASSISRALDAR*

>peptide 2 (32 aa)
QIHATPGKARQTKVKPIRPTLPSLRETLLITK*

>peptide 3 (59 aa)
SNPRYTRKSKANKGKTNTTNIALSQRNLTYYQVDIRVENPIHIPITRCMRHSTTDRPTR*

>peptide 4 (30 aa)
MVFPVRVFTKICMPPRRRRTRWSVDSFWML*

Sequence

>CNT30591037
CTCAAATCCACGCTACACCAGGAAAAGCAAGGCAAACAAAGGTAAAACCAATACGACCAACATTGCCCTCTCTCAGAGAAACCTTACTTATTACCAAGTA
GACATACGTGTTGAGAATCCCATTCACATTCCCATCACACGCTGCATGAGACATAGCACAACGGATAGACCCACTAGATGATGAAGGCAACAAACGACGG
CATCAGGCAGAGTTCACTGCCCGCCACGGAGGCGGAGCACTAGGTGGAGAGTCGACTCCTTCTGTATGTTGTAGTCCGCAAGCGTACGGCCGTCCTCCAG
CTGTTTCCCGGCGAAGATTAGCCTTTGCTGGTCCGGCGGGATCCCCTCCTTGTCTTGAATCTTTGCTTTCACGTTGTCTATAGTGTCCGAGCTCTCAACC
TCCAGAGTAATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATGCCACCGCGGAGACGGAGGACGAGGTGGAGCGTCGACTCTTTCTGGATGTTGT
AGTCCGCAAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAAATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATCTTAGCTTTGAC
GTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTTTTTCCAGTGAGCGTCTTAACAAAGATCTGCATCTGTATCAGAGAAGACAAGGAATTG
GCATCAAGTATTAGCAGAGCACTTGACGCAAGATGACCGAACAATTCGAGAAACGGGAATCGAATCGCACCAACATGTAACCACCCACGGAAATCAAGAA
AAGAATCGAGATCCGATACGCGAGGGATTCATCAACAACAACAGGAAGCGATCATCAGTAAAATCGTCACATAACCCTAGTCAGATCCGGAAAGGACCAT
AAACAAGAACCACATCCAATCCCCCCTCCTCCCCCAAAAAAAAAAATCCAACAGCATCGAATCAAGAAGACGAACAAGCCGATCTACAAGGGCTTAATAC
AAACAAGAACCAGGATCCAATCGGAAATAATCAGCGCAATAGATCAGATGTTCTCAAAAAGTCCCTCATCTCATCAAATCAATATCAACAGACAACCCTT
ATAGATCTATTATTCCACTACGCAAAGATCAGCAGACGATAATCGACATAATTTCAAGAAGAAAACAGAGAATAATCGACATCAAAAGCGCAAAAGAAGA
GAAAGGGTAGAAAAATTGATA