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Detailed information on CNT30201348


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 3e-75

BLAST vs NONCODE:
NONMTRT002043, E-value = 2e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235498Pisum sativumBrassica oleracea42.2351.6384.1459forward
CNT3036185Pisum sativumCucumis melo42.2344.6986.06459forward

Expression of CNT30201348

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MEGRLLLDIVIRKSPSIFQLLTGKDQPLLVRWDSFLVLDLGLDVVNGV*

>peptide 2 (39 aa)
MVSELSTSRVMVFPVRVFTNICIWKIGINRYKLIRIKTS*

>peptide 3 (61 aa)
MITVHKIEFILGGLNIGPKKIISSQLPFQNNQDHKHNITQTAQNPPRRRSTRWRVDSFWIL*

>peptide 4 (31 aa)
MVSELSTSRVIVLPVRVLTKICIPPRRRNTR*

Sequence

>CNT30201348
TATATACAAATTATAAGTAGTTATCATTACTAGAGTATATAATCTTGACTAAATAACAACCACATATCATATAATAGCATAAAATAAAAACACAACACAC
CCATTACCCATTAGACACATCATTACAAAGGCAAAATACTAATTATTCACAACCATATGATAACAGTACATAAAATCGAATTTATTCTAGGGGGCCTCAA
TATAGGACCCAAAAAGATCATCAGTTCACAACTTCCATTTCAAAATAACCAAGATCACAAACACAACATAACACAAACAGCTCAAAACCCACCACGAAGA
CGGAGCACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTCCTTCCATCTTCCAACTGCTTACCGGCAAAGATCAACCTCTGCTGGT
CAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTAATAGTTTTACCAGTAAGAGTCTT
GACGAAAATTTGCATACCACCACGAAGACGCAACACAAGGTGAAGGGGTGGATTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGGCCGTCCTCAAGTTG
CTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTATCCTGGATCTTAGCTTTGACGTTATCGATGGTGTCGGAACTCTCAACCTCG
AGAGTGATGGTCTTTCCGGTGAGGGTTTTCACGAATATTTGCATCTGGAAAATCGGAATCAACAGATACAAATTAATCAGAATTAAAACATCATAACAAA
CGGATCTGAAGAATTACGTAATAACGCTATTAATTTCGTTCATACAAAGCTAAAATTTGAATTGAATTCACTACACCTTAACAAAAAAAAAGCTTTTAAC
AATCGGATCTAAAGAGATCCAAGAGAAACGAACAATTGATTGTTAATTCATCAAATTAGGATCAGATCAGAGAGAAACTCATGAACAATTAAGCAATTAC
AAATCCTACAAGATCGATTTTTGAAAGATCTACGATATTTAGAAGCGAAAAGAAAATCAATAGAGAAAATCAAATAGAGAAAATACC