Detailed information on CNT30227205


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676534Hordeum vulgareSetaria viridis28.8518.78875forward
CNT30523740Hordeum vulgareSetaria italica28.8510.848875forward
CNT3016825Hordeum vulgareZea mays20.3818.2190.5753forward
CNT30367502Hordeum vulgareSorghum bicolor20.388.3788.6853forward
CNT30557505Hordeum vulgarePanicum hallii20.776.1988.8954forward

Expression of CNT30227205

Peptides detected in this lncRNA

>peptide 1 (62 aa)
ARDDVAGLEDVDERGAVGGRLVERLLEEDDAGEADMAATVSVRRLRDRLQNPNAGLLCSRFL*

>peptide 2 (45 aa)
MTPERQTWRRPCRSGGSGTGCKIQTLGCCARAFCEVAVRAIPLPL*

Sequence

>CNT30227205
GCCCGGGATGACGTTGCCGGCCTTGAGGATGTCGACGAACGGGGTGCCGTCGGCGGCCGTCTGGTAGAGCGTCTCCTCGAAGAGGATGACGCCGGAGAGG
CAGACATGGCGGCGACCGTGTCGGTCAGGAGGCTCCGGGACCGGCTGCAAAATCCAAACGCTGGGCTGCTGTGCTCGCGCTTTTTGTGAGGTGGCTGTGC
GAGCTATCCCTCTCCCCTTATAAACCCTGGACGTGAGGAGGATATGCCGAACGGGCGAGG