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Detailed information on CNT30523740


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 2e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Setaria italicaOryza sativa39.3120.7584.19272forward
CNT30227205Setaria italicaHordeum vulgare10.8428.858875forward

Expression of CNT30523740

Peptides detected in this lncRNA

>peptide 1 (30 aa)
HAQSIDEHHAWIITAKTCLACVTSMYRRSS*

>peptide 2 (74 aa)
MPCSPSSRISGSTIGTSPLSCSAASRAARPSRPWHQDSSLEPASGTRPLSTLIPGTMPCSVRMSTIRRPSTADW*

>peptide 3 (68 aa)
MPSLASAASPSERNMMPGTEGGMRRWRSFRVYSATCSGVARSLASAPGVTMDGLSRMPSNMTLFSAMA*

Sequence

>CNT30523740
CACGCACAAAGCATCGATGAGCACCATGCATGGATCATCACAGCGAAGACGTGCTTAGCTTGCGTAACCAGTATGTATCGTCGGAGTAGCTAGCCGATGA
ATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGAGGAACATGATGCCGGGGACGGAGGGCGGGATGCGGCG
GTGGAGGAGCTTCAGGGTGTACTCGGCGACCTGCTCCGGCGTGGCCCGGTCCTTAGCCTCGGCGCCCGGCGTCACCATGGATGGCTTGAGCAGGATGCCC
TCGAACATGACGTTGTTCTCCGCCATGGCGTAGAAGGTCTCGGCCCACACCTTCTGCGCCACCTCGAAGGTCCGCTCGATGCCGTGCTCGCCGTCCAGCA
GGATCTCCGGCTCTACGATCGGCACAAGTCCGTTGTCCTGCTCGGCGGCCTCGCGGGCGGCGAGGCCGTCGAGGCCCTGGCACCAGGACTCGTCGTTGGA
GCCGGCGAGCGGGACGAGGCCCTTGTCGACCTTGATCCCGGGCACGATGCCCTGCTCGGTGAGGATGTCGACGATCCGGCGGCCGTCGACGGCGGACTGG
TAGAGCGTCTCCTCGAAAAGGATGGCGCCGGAGATGTAGTTGCCCAGCCCCGGCGCGGTGACCAGCAGCGTCCTGTACGCCTGCCGGTTGGC