Detailed information on CNT3016825


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 6e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676534Zea maysSetaria viridis50.1736.4190.41146forward
CNT30227205Zea maysHordeum vulgare18.2120.3890.5753forward
CNT30394143Zea maysTriticum turgidum35.7417.8791.35104forward

Expression of CNT3016825

Peptides detected in this lncRNA

>peptide 1 (95 aa)
GGVACEPPRGLLDGELGGAVRDADDGAPLGEPRALAPRLVVGAGERDKALVHLDPRHDALLRQDVHDLAAVDGGLVQRLLEEDGAGDVLAQARRRD

>peptide 2 (74 aa)
MLTTVRHLANRAPWHHDSLLEPASGTRPLSTLIPGTMPCSARMSTILRPSTADWYSVSSKRMAPEMYWPRPGAVT

Sequence

>CNT3016825
TGGCGGCGTAGCGTGCGAGCCCCCACGCGGCCTCCTTGACGGCGAGCTCGGAGGGGCCGTTAGGGATGCTGACGACGGTGCGCCACTTGGCGAACCGCGC
GCCCTGGCACCACGACTCGTTGTTGGAGCCGGCGAGCGGGACAAGGCCCTTGTCCACCTTGATCCCCGGCACGATGCCCTGCTCCGCCAGGATGTCCACG
ATCTTGCGGCCGTCGACGGCGGACTGGTACAGCGTCTCCTCGAAGAGGATGGCGCCGGAGATGTACTGGCCCAGGCCCGGCGCCGTGACCA