Detailed information on CNT30367502


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 3e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676534Sorghum bicolorSetaria viridis21.834.4190.58138forward
CNT30524056Sorghum bicolorSetaria italica63.1936.9788.5400forward
CNT30640852Sorghum bicolorNymphaea colorata23.2242.3683.67147forward
CNT30631336Sorghum bicolorVigna unguiculata16.945.1582.24107forward
CNT30227205Sorghum bicolorHordeum vulgare8.3720.3888.6853forward
CNT30586190Sorghum bicolorMusa acuminata10.926.7486.9669forward
CNT30261311Sorghum bicolorBrassica rapa30.3350.3983.85192forward
CNT3017878Sorghum bicolorZea mays63.1957.8994.25400forward
CNT30216367Sorghum bicolorKalanchoe fedtschenkoi16.1128.1886.27102forward
CNT30477141Sorghum bicolorArabidopsis halleri27.864.7180.11176forward
CNT30557185Sorghum bicolorPanicum hallii46.2946.0794.2293forward

Expression of CNT30367502

Peptides detected in this lncRNA

>peptide 1 (61 aa)
LDPVLAVEEDLRLHDRHQPIVLQERRLSCRSCHASCIVFFSHDYKSVNILLSTMTFQISEQ*

>peptide 2 (74 aa)
MSTIFRPSTADWYSVSSNRMAPEMYWPSPGAVTSSVRYACLFASVFSSPIDASLFPHVAFDSSIARMPRPGDAIV

>peptide 3 (44 aa)
ARSRARRRGGSPAPRSAPAHCPARTKVVMQVMPRIMYRVFLSRL*

>peptide 4 (46 aa)
SIPCSPSRRISGSTIGTSPLSCKNEGCHAGHATHHVSCFSLTIINQ*

Sequence

>CNT30367502
GCTCGATCCCGTGCTCGCCGTCGAGGAGGATCTCCGGCTCCACGATCGGCACCAGCCCATTGTCCTGCAAGAACGAAGGTTGTCATGCAGGTCATGCCAC
GCATCATGTATCGTGTTTTTCTCTCACGATTATAAATCAGTGAACATATTACTTTCAACCATGACTTTTCAGATAAGCGAACAATAGCAAATAATAAAGC
AACCAACCTGTGAGATGGCGGCGTAGCGAGCGAGGGATGCTGACGACGGTGCGCCACTTGGCGAACCGGGCGCCCTGCTGGTAGTAGGCGGCCTCGCGAG
AGGCGAGGCCGTCGAGGCCCTGGCACCAGGACTCGTTGTTGGAGCCGGCGAGCGGGACGAGGCCCTTGTCGACCTTGATCCCGGGCACGATCCCTTGCTC
CACCAGGATGTCGACGATCTTCCGGCCGTCGACGGCGGACTGGTACAGCGTCTCCTCGAACAGGATGGCGCCGGAGATGTACTGGCCCAGCCCCGGCGCC
GTCACCAGCAGCGTCCGGTACGCCTGCCTGTTCGCCTCCGTGTTCTCCAGCCCGATCGACGCCAGCCTCTTCCCGCACGTCGCGTTCGACTCGTCCATCG
CCAGGATGCCTCGCCCCGGCGACGCGATCGTTT