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Detailed information on CNT3022365


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 1e-90

BLAST vs NONCODE:
NONPOPT000587, E-value = 1e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374815Populus trichocarpaArabidopsis thaliana80.7199.2781.22410forward
CNT30189384Populus trichocarpaSecale cereale28.7418.5888.36146forward
CNT30624603Populus trichocarpaDaucus carota64.965087.27330forward
CNT30571189Populus trichocarpaVitis vinifera79.9265.9187.68406forward

Expression of CNT3022365

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLTNTLHLSASRPTSSETNPMLRHVSRTIFS

>peptide 2 (76 aa)
MAQRHILGGLISGITKHMALVTSTNLLWALGKVTVDTLGNIRALLLNVNQYFALVSIKTNVVRNKSNVTACVTNNLF

Sequence

>CNT3022365
ATGGGTTGAGGTGAAAGATAGTTTTCTCATCAAGGTACTTCTCCGGGATAACAGGCTTGATGACATACTCCTTTAGATCAGCGGCAATTTCATCATTTGT
GACAGTCTCATCATGCTGATAGAGATGAGAACAGTGTGGACACGAACAGGGACCATTGCACCATTGTCATTGAAGTACTCAACAGTAACTTGAGTCTTGC
CATCAGGTCTTAACCAAGGGCAGGTTCCATTCTTCCTAACCTCGGTGAGGCGAGCACCAAGCTTGGTGGCAAGAACATGGCTCAAAGGCATATACTCGGG
GGTCTCATCAGTGGCATAACCAAACATATGGCCCTGGTCACCAGCACCAATCTCCTCTGGGCGCTTGGTAAAGTGACCGTGGACACCCTGGGCAATATCC
GGGCTCTGTTGCTCAATGTTAACCAATACTTTGCACTTGTCAGCATCAAGACCAACGTCGTCAGAAACAAATCCAATGTTACGGCATGTGTCACGAACAA
TCTTTTCA