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Detailed information on CNT3021458


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501326Citrullus lanatusCoffea canephora91.614.0385.21426reverse complement
CNT30222384Citrullus lanatusHordeum vulgare33.985.6987.97158forward
CNT30259581Citrullus lanatusBrassica rapa41.7238.4994.33194forward
CNT30328853Citrullus lanatusAsparagus officinalis36.3410.591.12169forward
CNT3039020Citrullus lanatusCucumis melo52.4711.2695.49244reverse complement
CNT30576983Citrullus lanatusOryza barthii34.4124.585.62160reverse complement

Expression of CNT3021458

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGSESNPFSFLVWFGLLSILFVVRKGEGV*

Sequence

>CNT3021458
GGCAATATTGGATCAAACAATAGGGGGCCGTAGCACTGACCTCTTTTTTTATTGATTCAATACAATTAGGGGAAAAGATCGTACAGTTCCCTACCGAGAC
AAGAGAAAGTCTCAACGGATCCTCCGCGCGCTGGGCATACCTCTTCTGTGCGTCTTTCTCGTGGCGGGAACAGAACAACAGGGAAAGACCCGGCCGACCC
GCCCCTTACTATTAAAAGCTCGAGGGCGAGCTTTATTTAAGAGAGAATGGGGAGTGAATCGAATCCGTTTTCGTTCTTGGTTTGGTTCGGGCTCCTCTCG
ATCTTATTCGTAGTTAGGAAGGGGGAAGGAGTCTAAATCAATGGACATTAATGAACCATCATTGATGGACGTTGCACATGACACACGATCAATTCGACTC
AAGGTCCGGCGCTAATAGAAGTAGCGGACTCTCCTAGTAGCGAAGGAAAAGGGCAGGGCTTTTTT