« Back to Oryza barthii search


Detailed information on CNT30576983


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006415, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021458Oryza barthiiCitrullus lanatus24.534.4185.62160reverse complement
CNT30222384Oryza barthiiHordeum vulgare32.927.7592.09215reverse complement
CNT30259581Oryza barthiiBrassica rapa24.531.7587.5160reverse complement
CNT30328853Oryza barthiiAsparagus officinalis28.3311.588.11185reverse complement

Expression of CNT30576983

Peptides detected in this lncRNA

>peptide 1 (35 aa)
DERDRFKGIFPRGKFPPKSICNERNRNISYRILII*

>peptide 2 (63 aa)
MCNIHQWWFINVHIDLDSFHPPLYAKDQEGPKPNRERKHNSTHSCMARLVSFPRSRTLTGLPC*

>peptide 3 (32 aa)
TREIDSKEFFQEVNFLQNLYAMSEIGIFPIGF*

Sequence

>CNT30576983
GGACGAGAGAGATAGATTCAAAGGAATTTTTCCAAGAGGTAAATTTCCTCCAAAATCTATATGCAATGAGCGAAATAGGAATATTTCCTATAGGATTTTA
ATCATATGAAATTCCTCTACAAATTCTTTGATTAGAGAGGTTGTCGAAAAAAGGCGATCTATAGAGATTCCCCATCTATATCCAATCGAGAATAGAAGCG
AGTCGCTTCCGGCGTCAGTTTATAGTCTCTGCAGTCGGCACACCTTGTCAAGTTCCCTAACCCCCTTTATAGCTTCACGCTGTTTGAATAGTTCCAATTA
ATGGAATCGAAGTCATTACACGAGTGAGTTTAGCAAGCTGTTAGCACCTTCGCTAGACAAAGAGTAAGCGACTTCTATTAGCACCGGACCGTCGAGTCGA
ATTGATCATGTCATGTGCAACATCCATCAATGGTGGTTCATTAATGTCCATATAGATTTAGACTCCTTCCACCCTCCCTTATACGCAAAAGATCAAGAGG
GGCCCAAACCAAATCGAGAACGTAAACATAATTCAACTCACTCTTGTATGGCTCGCCTTGTGTCTTTCCCTCGATCCCGAACCTTGACTGGATTGCCGTG
TTAAGCTCCTAGTTTGACTGTTGGTGCCAAAGGGGCCCTTATCAATTGATTAA