Detailed information on CNT30222384


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002441, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537189Hordeum vulgareEucalyptus grandis7.8669.8790.83218reverse complement
CNT3021458Hordeum vulgareCitrullus lanatus5.6933.9887.97158forward
CNT30504588Hordeum vulgareNicotiana attenuata4.6143.3996.09128forward
CNT30556052Hordeum vulgareOryza glaberrima7.5383.9483.73209forward
CNT30259581Hordeum vulgareBrassica rapa5.7331.5591.19159forward
CNT30576983Hordeum vulgareOryza barthii7.7532.9292.09215reverse complement

Expression of CNT30222384

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MDINEPPLMDVAHDTRNSTRRSGANRSRLLSV*

>peptide 2 (42 aa)
MFRTREARAKLAMRRRLGKRGLNKRNCRLVEFDHSLFLSRAE*

>peptide 3 (40 aa)
MVRAIGKGPAERTVRITSAEPTWQAAGAAGKCLLGRPTAL*

>peptide 4 (78 aa)
MHGTSRPCLRGTVERATHECCRVGRANNSNVFGQFFEQESQRYLTFTMIRTPSSYGRARGVSFNMMMRMETRSTTGSS*

>peptide 5 (49 aa)
MGGIARSRSPLFYPFLYYPRGANPGGTERKKGRGGDHAWHFSTVSPRDS*

>peptide 6 (46 aa)
MALLDRVSEGQLNERLMNAAGSDEPITRTCSVSFLSKNHSVTLPSP*

>peptide 7 (66 aa)
MDIRILSDSSVRRVATKKKSLYRITAVEIKCRKEKVGFNESCDHDIVGACDGTDATSLISNGWHSP*

>peptide 8 (64 aa)
MRAHPTQERLCHMGTLGWKQSLWFLYPVRIIRKNQSPGWLVSLVIGDYLAWFGEHLLGLRFVFC*

Sequence

>CNT30222384
GGAGAAAAGAGTAAGGAGTACCGGAAAAAGAAGATTTTGGACTTTCTGCCCACGAAGAAATAGTAGCATTTGAAACTGGAAAGATTTACTTTGGATAGTA
AATCCCCAAGGAAGGGCTATAATCCAAACAAAGGAGGAGCTAGCGGACAGTTCGAATTTCAACGATTAGGGAGGGGAATGAAACACTTGTCTTTCACAAT
CAATTCTTTCTTTTTTTTATGTTTAGGACACGCGAAGCGAGAGCGAAACTCGCTATGAGGAGAAGACTCGGCAAGAGAGGTTTGAACAAGAGGAACTGCC
GTCTAGTTGAGTTTGATCATTCTCTCTTTCTTTCAAGAGCTGAATAAGGGCATATCCGCAAAGGAGAGAGAAATCGGACTTTCTTCTTTACCCCCCTCAT
TATTCAAGACGTGAATATAAAGTGTATTGTACTCCCTTGGATCTTTTCCGGGATCTTTACTCGTCGTTGATCAAGGAAGCTAGAAGGAAGATGGGTGGTA
GGGTGAATGGACATTCGTATCCTCTCCGACTCGTCGGTTAGGAGAGTAGCGACCAAAAAGAAATCATTATACAGGATAACTGCTGTAGAGATAAAATGTA
GGAAGGAGAAAGTTGGTTTCAATGAGTCATGTGATCATGACATTGTAGGTGCTTGCGATGGGACGGATGCGACTTCCCTCATAAGTAATGGGTGGCATAG
CCCGTAGCAGAAGTCCCCTTTTTTATCCATTTCTTTATTACCCCAGAGGGGCCAACCCTGGTGGGACCGAGAGAAAGAAAGGACGGGGGGGCGACCATGC
ATGGCACTTCTCGACCGTGTCTCCGAGGGACAGTTGAACGAGCGACTCATGAATGCTGCCGGGTCGGACGAGCCAATAACTCGAACGTGTTCGGTCAGTT
TTTTGAGCAAGAATCACAGCGTTACCTTACCTTCACCATGATACGGACTCCAAGTTCTTATGGCAGAGCACGAGGAGTTTCCTTCAATATGATGATGAGA
ATGGAAACCAGAAGCACGACTGGGTCTTCGTAGTCCGAGATCATACTTATATATCANTCAATATGATGATGAGAATGGAAACCAGAAGCACGACTGGGTC
TTCGTAGTCCGAGATCATACTTATATATCAGTCACAGTAACGTAAGCATGAGACTTTTTGGTAGTACCGGTGAACCAGATGGCCGCGGCGAGGGAATCTG
GGACGGAGGACTCGTAATATCTCTATAGATCTGGCAAAAGCGAAAGACCCCTAACGTCAGGGGCTGACCACTGAGCTCACTCAGGCCTCGCTGGGCGGGC
CAGAGTGGGTGCGAGCTGGAATTGCCATAGCTTATGGTTAGAGCAATAGGAAAGGGCCCAGCAGAGAGAACAGTCAGGATAACGAGCGCGGAGCCCACTT
GGCAGGCGGCAGGAGCAGCGGGCAAGTGCTTGCTTGGTAGGCCAACAGCCCTGTGAACCGAGCGGGGCACTCGACGAAAGGGGGGCACGCTGAGCAAGTA
CGCAAAATTGGCCCCGCGGAGCTTTCAAAAAGAAAAGCAAGGACCACTACGGGAGGTCGAACCACGGACCGGAGGTAGTAGAACGTGATCCGCACCGGTC
AATATTGGATCAAACAATAGGGGACCGTAGCACTGACCTTTTTTTTCAAGACAATAGGTACTGTTCCCTACCGAGACAAGGGACACTCTCAACGGATCCT
CCACGCGCTGGGCATACCATAGTTCTTCCGTGCGTCTTTATCGTGGCGGAAACAGAACAAGAGGGAAAGACCCAGCCGACTCGCCCAGGGCTCGAGGGCG
AGCCATACGAGAGTGAGTCGAATTCTGTTTACGTTCTCGGTTTGGGTTCGGGCCCCTCTCGATCTTTTGCGTATAAGGGAAGGGGGAAGGAGTCTAAATC
TATGGACATTAATGAACCACCATTGATGGACGTTGCACATGACACGAGAAATTCGACTCGACGGTCCGGTGCTAATAGAAGTCGCTTACTCTCCGTCTAG
CGAAGGTGCCAGATCCTTAAAGTAAAGTATCTATCAGCCTAGTGTACCAACCACGTGGTACGACGGGCACTCAAAGACCTGGCGAATGAGGGCCCACCCC
ACCCAAGAGCGCTTATGTCATATGGGAACTCTCGGCTGGAAACAATCCTTATGGTTTTTATATCCGGTTAGAATAATAAGAAAGAATCAAAGTCCAGGTT
GGTTGGTGAGCCTAGTGATAGGAGACTATCTAGCTTGGTTCGGAGAGCACTTGTTGGGTTTAAGATTCGTTTTTTGCTAAATGTTACGGCCTAAATGCTG
AACTATTGACCCTACTCAGCCATCTCTCCACCGCCTAATCCTTATTTTACTCCTACAAATAGAACATAGCCATATAAAAAATAAAAATATTTATTAACCT
CTAGAAAGATATCAGATACAAGTTCCTTTTCGATATATCTCTGTATACTGTATACACGGATACAGGATCCGCTATACCCGCTTGTGAAATAAAGACTAAA
TAACCTCCTCTCACCCCCATATCCAAATAAAAAAGAGGTTAAGTAATAAATTTTAATTAAAGAGAAGAATCGATCACTTACTTCGCTCGCCCTTTTTTGA
TCGGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTATCCTTCGCAAACCAACTGAGCTATAAAGCTTTTTTTGTTGAAGT
GGCAGACACAAGATAAATAATGTGAAACCGGATCTCTCTTACTACAGTGGGAGGTGTAGGCCTTATTTGCAGCAT