Detailed information on CNT3039020


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021458Cucumis meloCitrullus lanatus11.2652.4795.49244reverse complement
CNT30504588Cucumis meloNicotiana attenuata11.1782.0396.28242reverse complement
CNT30259581Cucumis meloBrassica rapa9.9242.6690.7215reverse complement

Expression of CNT3039020

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRMTQTSSSSELMGFFPAFLYDISALGAGHSIFSLRRSYLMVGVAIG*

>peptide 2 (55 aa)
MSLRGDAIRQAGAKKAVRPPTGLGMRRPFEGERRPGKERAMLLTDPSYRSGFRSI*

>peptide 3 (63 aa)
MWTLLSPRTSNTIYLVVRSSFFFSLLIPLNEICHVALSYLRMYACGPGTLWGEHPSEQVGSIV*

>peptide 4 (62 aa)
MERSPCVIRNPRKDRLRLPPRSHEDLYVLVQSRTRSSGLRAWEQLKERRVWSEFWPGLPVCC*

Sequence

>CNT3039020
CAGATCTCAAGAATTTGCCAAAGAGCCTTCTTCTAACTAGTTAGAATTGAGAATTGATCCTTTTCCTTCGACTTAGGTGGAGCAATCCCCGAACTCTCGA
CAGAATAGAAAAGAGGTTTTGATTCCTGTGTAGACACCTCAACGAACTCATGTGGACACTCCTTAGCCCGAGGACATCAAATACGATATACTTAGTTGTC
AGATCTTCCTTTTTCTTTTCTTTACTGATTCCTCTCAATGAAATTTGCCATGTTGCACTAAGTTACTTACGGATGTATGCATGTGGTCCGGGAACACTTT
GGGGTGAACACCCATCCGAACAAGTAGGGTCAATAGTTTAGCATTTAGGCCGTAACATTTAGCAAGAAAGAAAGATTGAACCCAACAAGTGCTCTCCGAA
CCAAGCTAGATAGTTTCCTATCACTAGGCTCACCAACCAACCTGGACTTTTCTTTCTCTTATTCCTACCGGTCCGGAGGACAGAAGTTTGAGTGGTCCTA
CGTCCGTCCTCAGGCATTGAATGAGTGGAATGAAAAGCTCAAATTCTTCGATCATTCTTTGACTTTATTCGCAAATTCTTTGCGCCTCACTCTCCTTTCA
GTCGAGACCTCTGGAACTCGTCCGGAGTCCTTGAAATCTTCTTTGAACCCGTCCGTAGGACTTGTTTATATCCATATTAGCTTGAATTCAGCCTTTGTTT
AAATTAAACCAGTGAGGACTAGTTTAATTAGCCTGTGGAATTCTTTCGTTGCACTCCCGTAGTTAGGGGCAAAGAATTTGCGAAGGACTCCTTTTCTCTG
ATTTTCTTAGATAAATGCCTTTCGCTTCGCGCCGGAGGACCCGTCCGACCGCCCCGTGGGAATATGTAGGATGAAAGGACCCAGAGATGCGGATGACTCA
AACTTCTTCTTCTTCTGAACTTATGGGATTCTTTCCAGCCTTCCTATATGACATAAGCGCTCTTGGGGCCGGCCATTCCATCTTTTCTTTGAGAAGGTCG
TATTTGATGGTCGGCGTGGCGATAGGCTGAGCTTCGTAGACTGCCTCCCCAGCCCTTGCAAAGACTGAGCGAGAACGGTCAGGGGCGCACAAAGAATGTC
GTTGCGCGGGGATGCGATTCGCCAAGCTGGGGCAAAGAAAGCCGTCCGGCCCCCCACCGGATTAGGAATGCGAAGGCCTTTCGAAGGAGAAAGGAGACCC
GGGAAAGAAAGAGCTATGCTATTGACCGACCCTTCTTATCGCTCCGGGTTCCGATCTATATGACCTCCGGGCGGTACAAAGTCAACCTCTGTAGTAGAGG
CAGGCAGGTAGTAAGCTAACCTTTCTGAGTCTCTTCAAGGTGGTAGTTATACCACCTCTGACAATGGAAAGATCTCCGTGCGTGATAAGGAATCCTAGAA
AAGATCGATTGAGACTCCCTCCCCGGTCCCACGAAGATCTCTACGTACTTGTCCAGTCCAGGACAAGATCTTCCGGTCTGCGTGCGTGGGAGCAGCTCAA
AGAAAGAAGAGTCTGGTCTGAATTCTGGCCCGGCCTGCCCGTCTGCTGCTAGGTCCGGGAATGGCGCCAGGCGAGGGCGTCAACTCATCTGGAGTAGCTT
ACTCTGCTGCGACCTGAATTTGATTCGGCCGGCATAGATCTCATGAGACCGGCCCACTATTACGACGAAAAAAGCCCTGCCCTTTTCCTTCGCTACTAGG
AGAGTCCGCTACTTCTATTAGCGCCGGACCTTGAGTCGAATTTCTCGTGTGTCATGTGCAACGTCCATCAATGATGGTGAATTAATGTCCATTGATTTAG
ACTCCTTCCCCCTTCCTAACTACGAATAAGAGAGAGAGGAGCCCGAACCAAAGCAAGAATTAAAACGGATGAGATTCACTCCCCATTCTCTCTTAAATAA
AGCTCGCCCTCTATAAGTACCAACCGGAAAGAAGAAAGCCTACTTAAAGTATATGGAATAAATTAGTCCGACTATCGATACCTTCTTTTGTTATCTTCCC
GCCACGAGAAAGACGCTAAAAAATGAAGAGCACACGTAGGCTCAAAGAAAACAAAGGTCCTCAATGAGAGACTCCGTAGGCTAAAAAAGCAGAGGAGGCT
CGACTGAAAGGAGTCCAAGATTCAAGCTGAATCAATGAACAAAGGTTGAGAAGCGTCTGGTCCGGAG