Detailed information on CNT30259581


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501326Brassica rapaCoffea canephora36.711.7595.14185reverse complement
CNT3021458Brassica rapaCitrullus lanatus38.4941.7294.33194forward
CNT30222384Brassica rapaHordeum vulgare31.555.7391.19159forward
CNT30328853Brassica rapaAsparagus officinalis27.988.7695.74141forward
CNT3039020Brassica rapaCucumis melo42.669.9290.7215reverse complement
CNT30576983Brassica rapaOryza barthii31.7524.587.5160reverse complement

Expression of CNT30259581

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MDINEPSLMDVAHDTINSTQGPALIEVAYFPSSEGKGQGFFRGNSGRVSFRSKGLRIPNPPHQPRTA*

Sequence

>CNT30259581
AAGTAAATTTTTGGAATCGAGCTCTCACGTTAAAAGTTAGAGCGGTTAATATCAGTTATCCAAAATCTGACAATATAATTTAAAAAAGAGATAATTTCTG
TATATATTGTACAGTTCTCTGAAAAAGTCTTTTAGTAAAAAGTTAAAAACATGAATTATATATAAAAAGTTAAAAACCAAGCCGTTCTTGGTTTGGTTCG
GGCTCCTCTCGATCTTTTTCGTAGTAGGGAAGGGGGAAGGAGTCTAAATCTATGGACATTAATGAACCATCATTGATGGACGTTGCACATGACACGATCA
ATTCGACTCAAGGTCCGGCGCTAATAGAGGTTGCTTACTTTCCTAGTAGCGAAGGAAAAGGGCAGGGCTTTTTTCGTGGTAATAGTGGGCGGGTCTCCTT
TCGAAGTAAAGGCCTTCGCATTCCTAATCCGCCCCACCAACCACGAACGGCTTAGTTTGCCCCAGCTTGGTGAATCCCCGCGCAACGACATAGTTTGTGC
GCCC