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Detailed information on CNT3021235


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 8e-165

BLAST vs NONCODE:
NONMEST004097, E-value = 3e-138

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30564256Citrullus lanatusActinidia chinensis84.5950.9585.67593forward
CNT3084148Citrullus lanatusVigna radiata82.8835.6785.37581forward
CNT30368770Citrullus lanatusSorghum bicolor92.7290.7884.15650forward
CNT30113122Citrullus lanatusFicus carica69.3358.5584.36486forward

Expression of CNT3021235

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVHLNRLYFSSQSSWGKGDNHTGLDNTSFHTTHWNSSNTTNLVDILKWKTKGFV*

>peptide 2 (33 aa)
PASPFFKNLGSFSSSLPDRLSILVKISANLTAM*

>peptide 3 (29 aa)
QHLRFSRTWALSRVLYQIACQSWLKSRQI*

Sequence

>CNT3021235
CCAGCATCTCCGTTTTTCAAGAACTTGGGCTCTTTCTCGAGTTCTTTACCAGATCGCCTGTCAATCTTGGTTAAAATCTCGGCAAATTTGACTGCAATGT
GAGAGGTGTGGCAGTCGAGGACAGGAGCATAGCCATTTCCAATCTGCCCTGGATGGTTCATGATAATAACTTGGGAAGTGAAATTGGCAGCTTCCTTAGC
AGGGTCATCCTTGGAATTTGAGGCAACGTAACCACGCTTGAGATCCTTCACAGCAACATTCTTCACGTTGAACCCCACATTATCACCAGGGAGAGCTTCT
TGGAGAGCTTCATGGTGCATCTCAACAGACTTTACTTCAGTAGTCAGTCCAGTTGGGGCAAAGGTGACAACCATACCGGGCTTGATAATACCAGTTTCCA
CACGACCCACTGGAACAGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGAAGACGAAGGGGTTTGTCTGATGGTCTCTTAGGCTCTTGGATCAG
GTCAAGGGCCTCAAGAAGGGTTGGTCCCTTGTACCAGTCGAGGTTTGTAGATCTTTCAATCATGTTGTCACCCTCAAATCCAGAGATCGGGACGAAGGGA
ATTTTGTCTGGGTTATACCCAACCTTCTTGAGGTAAGAAGAAACTTCCTTCACGATTTCATCGTACCTAGATTTTGAGTACTTGGGAGTGGTAGCATCCA
T