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Detailed information on CNT3020919


BLAST search results

BLAST vs Swiss-Prot:
sp|O22342|ADT1_GOSHI, E-value = 5e-66

BLAST vs NONCODE:
NONPOPT002032, E-value = 9e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670610Citrullus lanatusSetaria viridis13.740.8981.82110forward
CNT30618446Citrullus lanatusSesamum indicum25.288.2985.22203forward
CNT30441730Citrullus lanatusAegilops tauschii28.2723.6580.62227forward
CNT30314202Citrullus lanatusCamelina sativa18.3137.2285.71147forward
CNT30329500Citrullus lanatusDioscorea rotundata28.2738.9480.18227forward
CNT30724403Citrullus lanatusLupinus angustifolius25.956.2281.25208forward

Expression of CNT3020919

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTLAVFPLHNEPKPSSWIVRLKQSPIPLYGSDKRPDLIISS*

Sequence

>CNT3020919
CTTGAGTGGGGAAATAACGGATGACATTGGCAGTGTTTCCTCTCCACAATGAACCGAAACCCTCTTCCTGGATTGTGCGCTTGAAACAATCGCCAATACC
CTTGTATGGCTCAGACAAACGTCCAGATTTAATCATCTCATCCTGATTTTGAATCAAGAGCTTGACACGCTCAATCGGGGCAGCAGCTGTCTTGGACACA
GCAGCAGACACACCACCCATAAGAAAGTCGATCATAAAGTTTCCTTTCTCCGCCGGGGCAGCAACAAAAATGGGGGAGGCAGTTGAGGCAACCCTAGAAA
GATCAGTAGTAGCAGGATACTGAAAAGCAGCATTTGTATGATTGCTGATTGATGCACGCCTCGGATAAAATGCAGGGTTCCTAAAGCCATCATCACAAGA
ACGGAAACCCGAAGCAACCCTAGAAAGATCAGTAGTAGCAACACAGGATTGCACAGCAGGATACTGAAAAGCAGCATTTGTATGATTGCTGATTGATGCA
CGCCTCTGATAAAGTGCAGGGTTCCTAAAGCCATCATCACAAGAACGGAAACCCGAAGCAACCCTCGACTGAAGGGAGAGCTGACCAGCAACCTTCTGGT
AGATGGTGGGATGTTGAACCTGATCAGCCATGGCTACTTCTTCCCTGCAATAATTCCCAGTGTCCGGATCAGATGAGAAACTCTTATTTCATTTTAAAAC
AAGGGATCACAAAAAGACACTACAGTAATGAGACAAGACCATGGCTTTAGTGGGGCAGACAGCTATCAAAGGAAAATGAGATTTATTCAGAATCGAAGAA
CAG