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Detailed information on CNT30441730


BLAST search results

BLAST vs Swiss-Prot:
sp|P31691|ADT_ORYSJ, E-value = 3e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020919Aegilops tauschiiCitrullus lanatus23.6528.2780.62227forward
CNT30253145Aegilops tauschiiAvena sativa21.1565.794.58203forward
CNT30715150Aegilops tauschiiMalus domestica golden23.3392.5681.25224forward
CNT30426944Aegilops tauschiiPapaver somniferum22.0870.986.79212forward
CNT30329515Aegilops tauschiiDioscorea rotundata24.931.2883.26239forward

Expression of CNT30441730

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MTLAVFPLHSEPKPSSLMVRPKQSPIPLYGSESLPALIISSWFWISSLTRSIGAAAVLETAADTPPMRKSIAKF*

>peptide 2 (45 aa)
MLRARTPSEKLEARWNCPPNFCMTDGWLARSAISDLQQQSNQCIS*

>peptide 3 (49 aa)
MRPKTHTTTSTDLPNHEQRHGFQLVRVMCNRNLLASKQTKANKQVRICRH

>peptide 4 (34 aa)
MSKDTAFNWCVSCATEIYLHLNKQRRTNRSGSVDI

Sequence

>CNT30441730
CCTGAGTTGGGAAGTAACGGATGACGTTAGCAGTGTTTCCTCTCCACAGTGAGCCAAAGCCTTCATCCTTGATGGTGCGCCCAAAGCAGTCACCAATACC
CTTGTATGGCTCAGAGAGCCTGCCAGCCTTGATCATCTCATCCTGGTTCTGGATAAGCAGCTTAACACGCTCAATAGGAGCTGCAGCAGTCTTGGAAACT
GCAGCTGACACTCCTCCCATGAGGAAGTCAATCGCAAAGTTCTGAGTCATGTAGCTGCTTGTGGTGAAGCGCCTCTCATAGGATGGCACAGAAGGGCAGA
TGTTGCGAGCACGAACACCCTCAGAGAAGCTGGAGGCAAGGTGGAACTGTCCACCAAACTTCTGCATGACAGACGGGTGGTTAGCACGGTCCGCCATCTC
TGACCTGCAACAACAATCAAACCAATGTATAAGTTAGCAAGCTTGATGTAATAATGAAACGGTGTATAAACTAACATACGGCCAGGAAATAACAAGTAAA
TCAGGTAAACCGTACTATCTCATATAGATATATAATAACACAATTGTACCATAGCCATCTCTACAACTTGGTTAGCCCTAATCTGTAAGAACTCATTTTA
GAAATTTACTGATAATCCCTGCTAGCAACATAATTAATAAACAGAGTAGTATTGCATGCTGACAGAAAACCTAGTTGAGACGCTTGAAAATAATCAAATG
GGATAATAAAAACATGGCAATCACAATCAGCACATAATGCTAAACTGAAATTAGGTTCAATCCAGGTGGATCAACCGAGTCAAAGTGCATCATTAACAGA
AACAACTCAATGAGGCCTAAAACCCACACTACGACATCAACAGATCTACCTAATCATGAGCAAAGACACGGCTTTCAATTGGTGCGTGTCATGTGCAACA
GAAATCTACTTGCATCTAAACAAACAAAGGCGAACAAACAGGTCAGGATCTGTAGACATT