Detailed information on CNT30193407


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30290324Secale cerealeTriticum aestivum63.1184.2599.41337reverse complement
CNT30396669Secale cerealeTriticum turgidum49.6363.499.62265forward
CNT3017992Secale cerealeZea mays33.924.6384.53181forward
CNT30370768Secale cerealeOryza glumipatula23.419.6796125forward
CNT30101297Secale cerealeOryza rufipogon36.5229.8692.82195forward

Expression of CNT30193407

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MESQLPFFWISILFRYGVCRSNSYIKKTFSFHFVSLSLESLEKIIALSFI*

Sequence

>CNT30193407
GCTTGCTATTATTAGAAATGTCCAAAAAATATCATATTCGTGAAGCAGAAACATAATGTACTCCCATTAATGTGGAATAGGCGGAACTTAAATTAGTCAA
TTCAATTCAGCATTGTCAATTTATCCAGAACTTCTCTCTTTTCCTCGGTGAAACAAGAATCTTTTTTGTTCAAACAAAAGCGCTTAGTTTAGCCTTTGTT
TCCTCTGTGCTGCATCTTCTTTAAAGATTAATCCAATGGAATCCCAACTCCCTTTCTTTTGGATTTCCATTCTATTTAGATATGGTGTATGTAGATCTAA
TTCTTATATAAAGAAAACTTTCTCGTTTCACTTTGTCTCGCTTTCTCTAGAATCTCTAGAAAAAATAATAGCTCTATCCTTTATTTAATATTTAATAATA
AAATAATAAGAGACTATTAAATAAAAATGAGAATACTACTAAATTAGAACCTAATTAAGATAGTAGGACTAATCTATGCAGTATAATTAATGAGAATTAA
TACTATAAAATAAAAATAAAAAATAAAAATAAAG