Detailed information on CNT30396669


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193407Triticum turgidumSecale cereale69.3854.3199.31290forward
CNT30290324Triticum turgidumTriticum aestivum58.1360.7599.59243reverse complement
CNT3017992Triticum turgidumZea mays49.2828.0385.92206forward
CNT30101297Triticum turgidumOryza rufipogon23.9215.3190100forward

Expression of CNT30396669

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SIQFSIVNLSRTSLFSSVKQESFLFKQKRLV*

>peptide 2 (42 aa)
VNSIQHCQFIQNFSLFLGETRIFFVQTKALSLAFVSSVLHLL*

>peptide 3 (50 aa)
MESQLPFFWISILFRYGVCRSNSYIKKTFSFHFVSLSLESLEKRIALSFI*

Sequence

>CNT30396669
AGTCAATTCAATTCAGCATTGTCAATTTATCCAGAACTTCTCTCTTTTCCTCGGTGAAACAAGAATCTTTTTTGTTCAAACAAAAGCGCTTAGTTTAGCC
TTTGTTTCCTCTGTGCTGCATCTTCTTTAAAGATTCATCCAATGGAATCCCAACTCCCTTTCTTTTGGATTTCCATTCTATTTAGATATGGTGTATGTAG
ATCTAATTCTTATATAAAGAAAACTTTCTCGTTTCACTTTGTCTCGCTTTCTCTAGAATCTCTAGAAAAAAGAATAGCTCTATCCTTTATTTAATATTTA
ATAATAAAATAATAAGAGACTATTAAATAAAAATGAGAATACTACTAAATTAGAACCTAATTAAGATAGTAGGACTAATCTATGCAGTATAATTAATGAG
AAGTAATACTATAAAATA