CANTATAdb - search

Detailed information on CNT3017992

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT004695, E-value = 2e-163

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695333	Zea mays	Oryza sativa	25.58	78.99	85.11	188	reverse complement
CNT30193407	Zea mays	Secale cereale	28.71	39.51	85.31	211	forward
CNT30283743	Zea mays	Triticum aestivum	32.24	20.84	83.54	237	forward
CNT30396669	Zea mays	Triticum turgidum	28.71	50.48	86.26	211	forward

Expression of CNT3017992

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MKQNILFYYLLFLFFFLSIFSILFKVDRFR*

>peptide 2 (29 aa)
SVLLKPKARSAYFSLYFFCDMSSLRIHPM*

>peptide 3 (44 aa)
MINIYILMRSNTKKRTLFQNYETEYPVLLFTLSFFFSFDFFYFI*

Sequence

>CNT3017992
TCTGTTTTGCTCAAACCAAAGGCAAGGAGCGCTTACTTTAGCCTTTATTTCTTTTGTGATATGTCTTCCTTAAGGATTCATCCAATGTAATCCCCACTTC
CCTTCTTTTTGATTTCCCTTCTATTTAGATATGATATAGACCTAATTCTTATACAAAGAAAACTCTTTCGCTTCACTTTGTCTCACTTTCTCTAGAATCT
CTAGAAAAAAGAATTGCTCTACCCTTTATTTAATGATAGTCAGAGACTATTAAATAAAAAAGAAAATACTTACTACTAATTGGATTAGAACCTAATTAAA
ATAGGATGATTAATATATATTAAAATAGGATGATTAATATATACATCCTAATGAGGAGTAATACTAAAAAAAGAACTCTATTTCAGAATTATGAAACAGA
ATATCCTGTTTTATTATTTACTCTTTCTTTTTTTTTTTCTTTCGATTTTTTCTATTTTATTTAAAGTGGATCGATTTAGATAATGTATATGATAGTAATA
TACTTCAAATAAAATAGGAATTCGCAAAATGGAGAAAATCGTTGCAGTCATTATAGGAAAGTATGGGAAGACTTAGAGCATATCCTATTTAAAGGAGGAT
GAAATTCAAATCAGGTAAGGGATCCTTCCTTCTATTGATTTGATCAAAATTCTTTTTTCTTTTCCTGTCTCTCTGATTTGCGTTTCGATGAATGAGCCTA
TGGTAATGCTTTTATCTCTATTCTATGGCGCAATC