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Detailed information on CNT30192541


BLAST search results

BLAST vs Swiss-Prot:
sp|P00228|FER_WHEAT, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695212Secale cerealeOryza sativa17.282490.48168forward
CNT30308049Secale cerealeTriticum aestivum48.9771.7994.33476forward
CNT30226363Secale cerealeHordeum vulgare34.9871.4393.24340forward
CNT30443354Secale cerealeAegilops tauschii43.1168.1391.41419forward
CNT30141331Secale cerealeLolium perenne22.3331.7790.32217forward
CNT30683915Secale cerealeTriticum urartu53.2961.0894.21518forward
CNT30596773Secale cerealeOryza meridionalis17.2825.4991.07168forward
CNT30370840Secale cerealeOryza glumipatula17.2823.3390.48168forward
CNT30102906Secale cerealeOryza rufipogon17.2821.6284.52168forward
CNT30551485Secale cerealeOryza brachyantha18.5223.1490180forward

Expression of CNT30192541

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MCREGSGRLIFGWMGGATRITRCSSRRRRGACGRRHPSGTYHARAA*

>peptide 2 (29 aa)
MHRAIHSSTKQSVYLAMSTHACMIQKEII*

Sequence

>CNT30192541
CTGGAAACCAACATTTATTAATCTCTTGTCTTAATTAAAAAGAAGATACTGTATTATTGATCAGAGAGACACCTCAGCCATCAGGATTCATTTCAGTACG
TCGAGTTACGTACACGCTAGTATTACGACAGTAGTATATCTTACGGTACAAAAAGGTAGTAATTCGAAGACATTATTACTTGAGCAAACCATGCATCGAG
CAATTCATTCGAGCACAAAACAATCGGTGTATCTGGCGATGTCCACGCATGCATGCATGATACAGAAGGAGATAATATGATATCAGCTCGATCCTCTTGC
AAAGAGAGATAGGTATAGCAGCTTATGCGGTGAGCTCCTCCTCTTTGTGGGTCTCGATGACGATGTCGGACTTGGGGTAGGCGTGGCAGGAGTAGGGCAG
GTCGATCCCCTCCTCCTCGGCCTGGTCGAGGATGTAGACGTCGTCGGGGACCTCCAGCTCCACCTCGCCCTCGGGCGTCACCAGCTTCACCTTGTACGTC
GCCTGCGCGCGGAGCCTGGCTCCCCGCACCTGCTTGGCGGCGGCGAGGCTGAGGGCCGCGGGCGCCAGGGCCACGCGGGGCGCCGGTGGCGCGACGGTGC
GCAGGGAGAAGGGCGCGCGGAGGCTCAGTGCGGCGGCCATTGTTGGCTAGCTAGCTGGAGCTTGGACGCTCTGTCTCTGTGTGGCTGAGGAGCTGGAGAG
GATAGGCGAGCGAGCTAGGGGATGGAGGAGTGAGGGGGGCGGGAATAAGTAAAGGATTGGAGGGCGGGTGCCATGTGTAGGGAAGGGAGTGGGCGTCTTA
TCTTCGGTTGGATGGGCGGGGCGACGAGGATCACACGCTGCTCATCTCGTCGTCGTCGAGGGGCGTGTGGCCGGCGACATCCATCGGGGACATACCACGC
GAGAGCCGCGTGACGTCGAGCGAGGCCAAATGAATAGCGATGGAAGATTCACGAAACTTTAATTGGTTGGAG