« Back to Aegilops tauschii search


Detailed information on CNT30442540


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 4e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30192020Aegilops tauschiiSecale cereale57.3160.3994.9529forward
CNT30669047Aegilops tauschiiTriticum dicoccoides100.4397.9995.9927forward

Expression of CNT30442540

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MACTKYPNMENIARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 2 (29 aa)
PLVFIWKMKTMHFSYRHFMFQTGPICKHL*

>peptide 3 (69 aa)
MCLLAGHKVGGEGPRVVVDRVGEVVSEVLQRTLTSDDGLHKVSKHGEHCKAAVLDFLHLELSKRLRVVG*

>peptide 4 (29 aa)
MAQRQWITSSSRFLAKVSGSAERPAVSHP*

Sequence

>CNT30442540
GTCCACTCGTATTCATATGGAAAATGAAAACCATGCATTTCTCATATAGACATTTCATGTTCCAGACGGGCCCTATTTGTAAACATCTTTGATAGTGTAC
AACATCAACGATCAGATATTAATCATACATCCAGAGTACACATATACTCCTGAGAAGTCGATTTTCATGTGTTTACTTGCCGGGCACAAAGTTGGTGGCG
AAGGCCCACGCGTTGTTGTTGACAGGGTCGGCGAGGTGGTCAGCGAGGTTCTCCAGCGGACCCTTACCAGTGACGATGGCCTGCACAAAGTATCCAAACA
TGGAGAACATTGCAAGGCGGCCGTTCTTGATTTCCTTCACCTTGAGCTCAGCAAACGCCTCCGGGTCGTCGGCTAGGCCAAGGGGGTCGAAGCTGCCACC
GGGGTAGAGTGGGTCGACGATCTCCCCGAGCGGGCCACCGGCGACGCGGCCGCCCTCGCTGAAGATCTGGGAGCCCGCCTTGAACCAGACTGCCTCGCCG
AACTTGACGCCGTTGCGAGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATTACCTCGAGCTCGCGGTTCTTGG
CGAAGGTCTCCGGGTCGGCGGAGAGGCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGCTGAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCC
GAGGTAGAGCACGCGGTCGGGGCCGTACCACGGGCTGTTGGAGGCGGAGGCCTTGGGCGCGGCCTTGCGCATGGTGATGCGGCCGCCGCCGCCGAGGGCG
TAGGAGGCTCCGGCGAGCTTGATCGCGGGGGAGGAGAGCGCCATGGTGGTGGTGGCCGCCATTGCTGCCGGATGGAACAGAGCAAGCTGCTGATGTGCGG
CTGCCGCTGCTACTGATGGGTGG