« Back to Arabidopsis halleri search


Detailed information on CNT30478499


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526769Arabidopsis halleriPhaseolus vulgaris45.9347.9683.69141forward
CNT30542251Arabidopsis halleriBrassica napus100.98100.9888.71310forward
CNT30237776Arabidopsis halleriBrassica oleracea100.98100.9888.71310forward
CNT30171622Arabidopsis halleriTrifolium pratense45.9346.6983.69141forward
CNT3059672Arabidopsis halleriArabidopsis lyrata100.33100.3395.78308forward
CNT3076575Arabidopsis halleriBrassica juncea100.3398.0985.71308forward
CNT30262508Arabidopsis halleriBrassica rapa94.4694.1686.9290forward
CNT30612441Arabidopsis halleriArabis alpina91.5391.2387.19281reverse complement
CNT30155059Arabidopsis halleriPrunus persica58.6358.6381.11180forward
CNT30704539Arabidopsis halleriPrunus avium57.9816.680.9178reverse complement
CNT30174902Arabidopsis halleriVigna angularis49.1949.5182.12151forward
CNT3050501Arabidopsis halleriCucumis sativus46.5846.8984.62143forward

Expression of CNT30478499

Peptides detected in this lncRNA

>peptide 1 (62 aa)
SSLVTQACDPSGDNKVMEHWVDLNGPGSCWALYWPAHSKSGVEAWVLSEGSGLLSLRAEETV*

Sequence

>CNT30478499
GTCGAGCTTAGTAACGCAGGCTTGTGATCCAAGTGGAGACAACAAGGTGATGGAACATTGGGTCGATCTCAATGGGCCGGGTTCGTGTTGGGCTCTCTAC
TGGCCTGCCCATTCCAAGTCGGGAGTTGAGGCTTGGGTCTTGAGCGAAGGCTCGGGGCTCTTGTCTCTTAGAGCGGAGGAGACCGTGTGAGGCTGGTTTC
ACAGAGCAGCGTCCACCTTCCTCTCTTGACGGTGGAAGGATAACGGGCCGGTGCCTTCCGAGCCCACTATGACCCATTAAGCCGACTCCATCTGGACCAT
CACTTTT