Detailed information on CNT3017074


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676112Zea maysSetaria viridis29.7616.7388.3786forward
CNT30524249Zea maysSetaria italica20.765.6996.6760forward
CNT30224096Zea maysHordeum vulgare24.2216.8388.5770forward
CNT30441160Zea maysAegilops tauschii27.3419.4184.8179forward
CNT30473249Zea maysSaccharum spontaneum26.6416.1893.5177forward

Expression of CNT3017074

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRERPAGHAGGGGLATTTGKSTTSTLSMAAMKVAARSAAEAKVSEKTCVKPCVSISWFSTSW

>peptide 2 (64 aa)
QAIDSTSTTTSTAAAGTRGSAARPEKGRRTVAGGCESGQRVMPAAEAWRRRRGSRRRAPCRWRP*

Sequence

>CNT3017074
AACAGGCAATAGACAGTACTAGTACTACTACCAGCACCGCCGCCGCAGGCACACGTGGATCTGCTGCGCGACCTGAGAAGGGGAGGCGTACAGTGGCCGG
CGGATGCGAGAGCGGCCAGCGGGTCATGCCGGCGGCGGAGGCTTGGCGACGACGACGGGGAAGTCGACGACGAGCACCTTGTCGATGGCGGCCATGAAGG
TGGCGGCGAGGTCGGCGGCGGAGGCGAAGGTGAGCGAGAAGACGTGCGTGAAGCCCTGCGTCAGCATCTCCTGGTTCAGCACGTCCTGG