Detailed information on CNT30441160


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FK81|Y5258_ARATH, E-value = 2e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676112Aegilops tauschiiSetaria viridis25.5520.2387.5104forward
CNT30524278Aegilops tauschiiSetaria italica17.9425.1790.4173forward
CNT30224096Aegilops tauschiiHordeum vulgare21.8721.3989.8989forward
CNT3017074Aegilops tauschiiZea mays19.4127.3484.8179forward

Expression of CNT30441160

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MLGRDTGGGSGRRRWLDEDQGEVHDDDLVERGHEGGGERRVLLVAHVRRQVLGAGEAHGEDVGEALRQRLLVQHVLS

>peptide 2 (53 aa)
MTTTLSSAAMKVAANAECFSWPMYAARSSALAKLMEKTWVKPCVSASWFSTSFP

>peptide 3 (50 aa)
AQVYSRVGNQTTFQGNTRHYSLTGRQLHQLNTEAEKGGSGTPTLHQSCSR*

>peptide 4 (30 aa)
SHKFIQGWVTKQLFKGTRGITVLQAGSCTS*

Sequence

>CNT30441160
TCGCACAAGTTTATTCAAGGGTGGGTAACCAAACAACTTTTCAAGGGAACACGCGGCATTACAGTCTTACAGGCAGGCAGCTGCACCAGCTAAACACTGA
AGCAGAGAAAGGAGGCTCAGGTACTCCTACACTACACCAGAGCTGCAGCAGATAGATAGATAGTTGGCACATCCATGCTTGGTAGAGATACTGGAGGCGG
ATCAGGCAGGCGGCGCTGGCTTGACGAAGACCAAGGGGAAGTCCATGACGACGACCTTGTCGAGCGCGGCCATGAAGGTGGCGGCGAACGCAGAGTGCTT
CTCGTGGCCCATGTACGCCGCCAGGTCCTCGGCGCTGGCGAAGCTCATGGAGAAGACGTGGGTGAAGCCCTGCGTCAGCGCCTCCTGGTTCAGCACGTCC
TTTCCCC