Detailed information on CNT30676112


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30441160Setaria viridisAegilops tauschii20.2325.5587.5104forward
CNT3017074Setaria viridisZea mays16.7329.7688.3786forward

Expression of CNT30676112

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MADRGSCLWRWLGDDDGEVDDDHLLECGHERGGERGVLLVGHVGGEVGHAFEDVLHHDALLELHQAQVLHLRHGTPSLLFQ*

>peptide 2 (50 aa)
MPLRMSSTTTPSLNFTRHRCFTSAMALPRSSSSEWLCRTRGVDGSWRQDAA

>peptide 3 (29 aa)
MTTGKSMTTTFSSAAMNVAANAACFSWAM*

>peptide 4 (36 aa)
PATRKITEIYSNRNQATNRDLNWVIFALQAQLHYMY*

Sequence

>CNT30676112
ACCTGCTACCAGAAAGATCACTGAAATTTATTCCAATAGGAATCAAGCAACCAATAGGGACTTGAACTGGGTGATATTTGCCTTACAGGCACAGCTACAC
TACATGTACTAGCCCGGAGGGATATATAGCAGAACAAGCAGTGATAAGCAGCCTTAGTACATTACCGCTGCAAACAGACGACGAGATCTGCTGCTACCTG
AAAAGTCACCGTACAATGGCCGACAGAGGCTCATGCCTGTGGCGGTGGCTTGGCGATGACGACGGGGAAGTCGATGACGACCACCTTCTCGAGTGCGGCC
ATGAACGTGGCGGCGAACGCGGCGTGCTTCTCGTGGGCCATGTAGGCGGTGAGGTCGGCCATGCCTTTGAGGATGTCCTCCACCACGACGCCCTCCTTGA
ACTTCACCAGGCACAGGTGCTTCACCTCCGCCATGGCACTCCCTCGCTCCTCTTCCAGTGAGTGGCTTTGCAGAACGAGAGGTGTGGATGGATCATGGCG
CCAAGATGCCGCCC