Detailed information on CNT30524249


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FK81|Y5258_ARATH, E-value = 7e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3017074Setaria italicaZea mays5.6920.7696.6760forward

Expression of CNT30524249

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MATGKSMTTTFSSAAMNVAANAACFSWDT*

>peptide 2 (30 aa)
MDLLPEKAPYNGRQRLTPVAVAWRWRRGSR*

>peptide 3 (96 aa)
MADRGSRLWRWLGDGDGEVDDDHLLECGHERGGERGVLLVGHVGGEGEDVGEALRQHLLVQHVLPPATTVSVFVRSFVHGGHEHIAISSYGSPSLF*

>peptide 4 (47 aa)
TINAEKREKLQMIVQVPATRKITEIYSNSNQATNRDWNGVIFALQLH*

>peptide 5 (47 aa)
MEAMNTLQYLAMVAHLSFSLVIIVILSLLGTSVLSKADSEEVGQIPG*

>peptide 6 (44 aa)
MSIWAARSAMPLRTSSTTTPSLNFTRHRCFTSPMPHSEWLCREDR

Sequence

>CNT30524249
CCACCATAAACGCCGAAAAGAGGGAAAAATTACAAATGATTGTACAGGTACCTGCTACCAGAAAGATCACTGAAATTTATTCCAATAGTAATCAAGCAAC
CAATAGGGACTGGAACGGAGTGATATTTGCCTTACAGCTACACTAGACGCACTAGCCGGGAGGGATACATAGCAGAACAAGCAGTGATAAGCAGCCTTTA
CATTACCGCTGCAAATAGACGATGGACCTGCTACCTGAAAAGGCACCGTACAATGGCCGACAGAGGCTCACGCCTGTGGCGGTGGCTTGGCGATGGCGAC
GGGGAAGTCGATGACGACCACCTTCTCGAGTGCGGCCATGAACGTGGCGGCGAACGCGGCGTGCTTCTCGTGGGACACGTAGGCGGTGAGGGAGAAGACG
TGGGTGAAGCCCTGCGTCAGCATCTCCTGGTTCAGCACGTCCTGCCCCCTGCAACAACAGTTTCAGTATTCGTTCGTTCGTTCGTTCATGGAGGCCATGA
ACACATTGCAATATCTAGCTATGGTAGCCCATCTCTCTTTTAGTTTAGTGATCATCGTGATACTGTCCTTGCTGGGCACGTCAGTTTTGAGTAAAGCAGA
CTCTGAAGAAGTTGGACAGATACCTGGATGACTGAACAAAAGCTTGCTTAACACATTCAGACTTCTAATAGCATGCGTTACTACTTGAAGATGTAGTGTA
AAGTTTACCCAAAAAGTTGAAATGCTGAATACACATTCAGCTTCACTGAAGTAAAGCACTAATAGCTAGTTTCTGAAGAAGTTGCTATGCGCTGAGTGAC
TGAACGTAAGCCTATAACACATTCAGACTCCTACACATCCTTGACGAAAGGGGGGAAATGGAGGAGGAAGTGCAAAGGTAACTCGATCATCATAGTGTTA
CCACTCGAAGGATTTGACCATGTCCATCTGGGCGGCAAGGTCGGCCATGCCTTTGAGGACGTCCTCCACCACGACGCCCTCCTTGAACTTCACCAGGCAC
AGGTGCTTCACCTCCCCCATGCCGCACTCCGAATGGCTTTGCAGAGAGGATCGGA