Detailed information on CNT30652139


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT78|RD21C_ARATH, E-value = 5e-36

BLAST vs NONCODE:
NONTCAT002529, E-value = 5e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30163285Rosa chinensisPistacia vera46.323.1583.5200forward

Expression of CNT30652139

Peptides detected in this lncRNA

>peptide 1 (68 aa)
VVFPYLKTQAFLDITNGIVTWTAVFSSSAANRILIFTATINQAVVKEFIEATTCLISWTIGEVSALAW*

>peptide 2 (46 aa)
MSHQLDNRRSLRIGLVKERVVVVVAVSLVVVEELEMDKERVQLTLW*

Sequence

>CNT30652139
GTAGTGTTTCCATACCTTAAGACACAGGCCTTCCTCGATATCACAAATGGGATAGTCACTTGGACAGCAGTATTCAGTTCCAGTGCAGCAAACCGCATTC
TCATATTCACAGCAACCATAAATCAAGCAGTAGTCAAAGAATTCATAGAGGCAACAACATGTCTCATCAGCTGGACAATAGGAGAAGTCTCCGCATTGGC
TTGGTGAAGGAGAGGGTGGTGGTGGTGGTGGCGGTGTCACTGGTGGTGGTGGAGGAGTTGGAGATGGATAAGGAGAGGGTGCAACTGACTCTTTGGTAGG
ATATGAAGCCATGGCATTGACTGCACAAACCCCATATGGCAAATCGGTGTTCCTTCTGAGGTAAAAGTATCCTTCAATCCCCCAACTAGTTCCCCATGAA
TTCTTTACAATCCAGTAATCTTCACCGTTTTC