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Detailed information on CNT30148953


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696483Brachypodium distachyonOryza sativa82.7818.5488.72399forward
CNT30258856Brachypodium distachyonAvena sativa82.7852.9290.73399reverse complement
CNT3068216Brachypodium distachyonLeersia perrieri21.1624.9486.27102reverse complement
CNT30371178Brachypodium distachyonOryza glumipatula37.7613.9392.86182forward
CNT30574605Brachypodium distachyonOryza barthii60.7917.2389.08293forward

Expression of CNT30148953

Peptides detected in this lncRNA

>peptide 1 (37 aa)
RNSGLLFVIFIGHFDFLGIFLLEHVHLITFILMTQVG*

Sequence

>CNT30148953
CGTAATTCAGGACTTTTATTTGTGATTTTCATTGGGCACTTTGATTTTCTGGGTATTTTCCTATTAGAGCACGTACACCTAATTACATTTATACTCATGA
CTCAAGTTGGCTAATTTGGACAGACAGACTTTAAAGGTAAAATCCTTCTAATTTTTTTGAGTTGTCTCTAAACTCTTTTTTTTGTCTCATTTCGAACGAA
TTGACTTTTATTCTTTATTCTGATCCAATTCTGTTGTTAAGAACAATTTAAAATTGTGTTTACTTGTTCGGGCATGTTTTATCTTTAATTTGTTAAATCC
TTGGGTTTAGACATTACTTCGGGAATTCCTATTCTTTGTTTCTTTCAAAAGAGTAGCAACATACCCTTTCTTCTTATTTCCTTCGATAAAAGCATTTCCC
TCTTCTATAGAAATCGAAGATGGGGGATTTATTCTGATAGACTTTTAATTAAAAGAATTTTCCAGATCTTCCAAAATGGTAT