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Detailed information on CNT30371178


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENI8|YCF70_ORYNI, E-value = 1e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696483Oryza glumipatulaOryza sativa43.1526.2199.29564forward
CNT30258856Oryza glumipatulaAvena sativa13.7723.8792.78180reverse complement
CNT30659176Oryza glumipatulaTriticum dicoccoides5.9723.7189.7478forward
CNT30148953Oryza glumipatulaBrachypodium distachyon13.9337.7692.86182forward
CNT30574605Oryza glumipatulaOryza barthii92.571.0898.351209forward
CNT30116966Oryza glumipatulaOryza nivara25.19.1698.78328forward

Expression of CNT30371178

Peptides detected in this lncRNA

>peptide 1 (37 aa)
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWV*

>peptide 2 (82 aa)
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGFKHYFGNSYSFFFQKSSNIPFFLISFDKAFPSSIEIEYERLILIDF*

>peptide 3 (70 aa)
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGLNITSGILILFSFKRVATYPFFLFPSIKHFPLL*

>peptide 4 (44 aa)
MSSQEHFHYYGKWWIAKSTIDRVLQVARCFLPHRFKRSFNITFL*

>peptide 5 (37 aa)
MSLLSRFSPFNLFFSSFPLNSSLLDSCLKESKKMNRTK

Sequence

>CNT30371178
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATCCTTGGGTTTAAACATTACTTCGGGAATTCTTATTCTTTTTTCTTTCAAAAGAGTAGCAACATACCCTTTTTTCTTATTTCCTTCGATAAAGCATTT
CCCTCTTCTATAGAAATCGAATATGAGCGATTGATTCTGATAGACTTTTAATCAAAAGAGTTTTCCCATATCTTCCAAAATTGGACTTTCTTCTTATTTT
AACCTTTTGATTTCTATATTATTTCGATTTCTATATTAAGGGTAGAATGACAAAGTTGGCCTAATTTATTAGTTTTCACTAACCCTAGATTCTTTCCCTT
GATAAAAAAGAAATTCTGTCCTCTCGAGCTCCATCGTGTACTATTTACTTAGCTTACTTACAAACAACCCAACGAAAATTCGGTTTGGGACGAATAGAAT
AGACTATGTCGAGCCAAGAGCATTTTCATTACTATGGAAAATGGTGGATAGCAAAATCCACAATCGATCGTGTCCTTCAAGTCGCACGTTGCTTTCTACC
ACATCGTTTTAAACGAAGTTTTAACATAACATTCCTCTAATTTCATTGCAAAGTGTTATAGGGAAAAGATGCTAATTCCCTCTTAGTTAATGAAACAGAG
AAGGTTCCTCACAGTTAGCGGTTGGTACTTCGATCGCGGGCCTTTCCTTTACTTTAAAATTTAGAGAGTCCCCGGTCTGTAAAATAAACCTACTCTTCCC
AATAGTGTATGAACCAAATGTATCATTTCAATTGTAATCGTATTCTACAATTACGACTACAATGATCATTATTTGCTTTGCGAAGACGTAAGTGTTCCAG
ACTGCTGTAAGGAATAGTTTGATTATTCCTACAATATACATTAGGAAATATAGGGTACCACAGCCTCAAAAATTCCTTTCTTTCCTTTCTTTTTTGTTCA
GAATTGAACAAAGAATTTGGGAAAGAAAACATCTTCCCCCACTTATCATGAAATCTGGGCCATAGAGAAAGAGTGAGATGTTTTTTTTTATTTATCATAG
ACTTTCCCTATGGCTTGAGAGAAACAATAAATAACTTAAAGAAAAAGGCGCATAGGAGCCGAAGGATTTACTTGATGTAAAGAAGATTCTGAATGTCTCT
GCTTAGTCGATTCTCTCCGTTTAACCTTTTCTTCTCTTCTTTTCCACTCAATTCTAGTTTATTAGATTCTTGTTTAAAAGAATCAAAGAAGATGAATAGA
ACTAAGA