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Detailed information on CNT30574605


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L383|PSBE_SACHY, E-value = 1e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696483Oryza barthiiOryza sativa42.0933.2799.3716forward
CNT3020910Oryza barthiiCitrullus lanatus8.2363.0687.86140forward
CNT30286499Oryza barthiiTriticum aestivum18.1723.8197.73309forward
CNT30234601Oryza barthiiBrassica oleracea11.0539.9289.89188forward
CNT30258856Oryza barthiiAvena sativa19.2243.3791.44327reverse complement
CNT30666971Oryza barthiiTriticum dicoccoides9.0560.3996.75154forward
CNT3068216Oryza barthiiLeersia perrieri9.5839.8588.34163reverse complement
CNT30355329Oryza barthiiLactuca sativa16.8740.4290.24287forward
CNT30371178Oryza barthiiOryza glumipatula71.0892.598.261209forward
CNT30148953Oryza barthiiBrachypodium distachyon19.1767.6389.26326forward

Expression of CNT30574605

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSSQEHFHYYGKWWIAKSTIDHVLQVARCFLPHRFKRSFNITFL*

>peptide 2 (73 aa)
MKQRRFLTVSGWYFDRGPFFTLRFRESPVCKINLLFPIAYEPNLCISIVVVFYNYDYNDHYLLCEDVSVPELL*

>peptide 3 (48 aa)
MSLLSRFSPFNFFFSSFPLNSSLLDSSLKESKKMNRTKNTQKRAYRPET

Sequence

>CNT30574605
CATAGTTCTATAGTTGGAATTTGGTTTATCGTTGGATGAACTGCATTGCTGATATTGATCCCAAGAAAAAAACAGTAGGTACAGCTAGTCCGTGAATAGC
CAACCATCGCACTGTAAAAATAGGATAGGTTCGATCTATGGTCATTGAGGGCCTTCTAAAAGGATCTACTAAATTCATCGAGTTGTTCTAAAGAATCAAA
ACGGTCGGTTATTAACAGAATTCCTTGTCGGCTTTCTATGAAATACTCGTTTGGCCGAGGACTTCCAAACACGTCATAAGCTAAACCCATACTGACAAAT
AACCAACCCTTTGAAATTTTTTGAGTCGTCTCTAAACTCTTTTCTTTGCCTCATCTCGAACAAATTCACTTTTATTCCTTATTCCAGTCCAATTCTATTG
TTGAGACAGTTGAAAATCGTGTTTACTTGTTCGGGAATCCTTTATCTTTGATTTGTGAAATCCTTGGGTTTAAACATTACTTCGGGAATTCTTATTCTTT
TTTCTTTCAAAAGAGTAGCAACATACCCTTTTTTCTTATTTCCTTCAATAAAGCATTTCCCTCTTCTATAGAAATCGAATATGAGCGATTGATTCTGATA
GACTTTTAATCAAAAGAGTTTTCCCATATCTTCCAAAATTGGACTTTCTTCTTATTTTAACCTTTTGATTTCTATATTATTTCGATTTCTATATTAAGGG
TAGAATGACAAAGTTGGCCTAATTTATTTGTTTTCACTAACCCTAGATTCTTTCCCTTGATAAAAAATAAATTCTGTCCTCTCGAGCTCCATCGTGTACT
ATTTACTTAGCTTACTTACAAACAACCCAGCGAAAATTCGGTTTGGGACGAATAGAACAGACTATGTCGAGCCAAGAGCATTTTCATTACTATGGAAAAT
GGTGGATAGCAAAATCCACAATCGATCATGTCCTTCAAGTCGCACGTTGCTTTCTACCACATCGTTTTAAACGAAGTTTTAACATAACATTCCTCTAATT
TCATTGCAAAGTGTTATAGGGAAAAGATGCTAATTCCCTCTTAGTTAATGAAACAGAGAAGGTTCCTCACAGTTAGCGGTTGGTACTTCGATCGTGGGCC
TTTTTTTACTTTAAGATTTAGAGAGTCCCCGGTCTGTAAAATAAACCTACTCTTCCCGATAGCGTATGAACCAAATTTATGCATTTCAATTGTAGTCGTA
TTCTACAATTACGACTACAATGATCATTATTTGCTTTGCGAAGACGTAAGTGTTCCAGAACTGCTGTAAGGAATAGTTTGATTATTCCTACAATATACAT
TAGGAAATATAGGGTACCACAGCCTCAAAAATTCCTTTCTTTCCTTTCTTTTTTGTTCAGAATTGAACAAAGAATTTGGGAAAGAAAACATCTTCCCCCA
CTTATCATGAAATCTGGGCCATAGAGAAAGAGTGAGATGTTTTTTTTTTATTTATCATAGACTTTCCCTATGGCTTGAGAGAAACAATAAATAACTTAAA
GAAAAAGGCGCATAGGAGCCGAAGGATTTACTTGATGTAAAGAAGATTCTGAATGTCTCTGCTTAGTCGATTCTCTCCGTTTAACTTTTTCTTCTCTTCT
TTTCCGCTCAATTCTAGTTTATTAGATTCTTCTTTAAAAGAATCAAAGAAGATGAATAGAACTAAGAACACACAAAAAAGAGCATATAGGCCCGAGACCA
T