CANTATAdb - search

Detailed information on CNT30696483

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENJ5|RR16_ORYNI, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30393155	Oryza sativa	Triticum turgidum	15.2	50.54	96.64	327	forward
CNT30258856	Oryza sativa	Avena sativa	19.66	56.1	91.49	423	reverse complement
CNT30229322	Oryza sativa	Ananas comosus	4.23	38.56	93.41	91	reverse complement
CNT3068216	Oryza sativa	Leersia perrieri	7.57	39.85	88.34	163	reverse complement
CNT30127870	Oryza sativa	Corymbia citriodora	9.39	36.27	89.11	202	forward
CNT30685543	Oryza sativa	Triticum urartu	11.11	87.23	97.49	239	forward
CNT30371178	Oryza sativa	Oryza glumipatula	26.21	43.15	99.29	564	forward
CNT30148953	Oryza sativa	Brachypodium distachyon	18.54	82.78	88.72	399	forward
CNT30574605	Oryza sativa	Oryza barthii	33.27	42.09	99.3	716	forward

Expression of CNT30696483

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSSQEHFHYYGKWWIAKSTIDRVLQVARCFLPHRFKRSFNITFL*

>peptide 2 (33 aa)
MKRKFFGSYRILVFLRLEYQKKEKNEVKKMHFL*

>peptide 3 (38 aa)
MFSETENERIRTASNLRVYKRKKFSLINFMSRAEYNTIS

>peptide 4 (36 aa)
MKYSSKKGNKQVCLRLIYYGISILNRGLEMINPILK*

Sequence

>CNT30696483
GCCGGCCTCGGGCCTCTCCTAGTTTTTTATTCATTTAGTTCTTCAATTAACTCAAAGTTCTTTCTTTTTCTTTAAAGAATTCCGCCTTCCTTAAAATATC
AGAAACTGTTCTTGTAGGTTGAGCACCTTTTTCAAGGAAATAGAGAATAGCTGGAACATTTAAACAAGTTTGATTCTTTATCGGATCATAAAAACCTACT
TTTCGAAGATCTCTTCCTTCTCTTCGAGATCGAACATCAATTGCAACGATTCGATAGACAGCTTATTGGGATAGATGTAGATAAACAAAGCCCCCCCTAG
AAACGTATAGGAGGTTTTCTCCTCATACGGCTCGAGAATATGACTTGCATTAATTTCCGTACAGAAAAAACAAATTTCATTTATACTCATGACTCAAGTT
GACTAATTTTGATTGACAGACTTGAAAGAAAAAAATCCTTTGAAATTTTTTGAGTCGTCTCTAAACTCTTTTCTTTGCCTCATCTCGAACAAATTCACTT
TTATTCCTTATTCCGGTCCAATTCTATTGTTGAGACAGTTGAAAATCGTGTTTACTTGTTCGGGAATCCTTTATCTTTGATTTGTGAAATCCTTGGGTTT
AAACATTACTTCGGGAATTCTTATTCTTTTTTCTTTCAAAAGAGTAGCAACATACCCTTTTTTCTTATTTCCTTCGATAAAGCATTTCCCTCTTCTATAG
AAATCGAATATGAGCGATTGATTCTGATAGACTTTTAATCAAAAGAGTTTTCCCATATCTTCCAAAATTGGACTTTCTTCTTATTTTAACCTTTTGATTT
CTATATTATTTCGATTTCTATATTAAGGGTAGAATGACAAAGTTGGCCTAATTTATTAGTTTTCACTAACCCTAGATTCTTTCCCTTGATAAAAAATAAA
TTCTGTCCTCTCGAGCTCCATCGTGTACTATTTACTTAGCTTACTTACAAACAACCCAGCGAAAATTCGGTTCGGGACGAATAGAACAGACTATGTCGAG
CCAAGAGCATTTTCATTACTATGGAAAATGGTGGATAGCAAAATCCACAATCGATCGTGTCCTTCAAGTCGCACGTTGCTTTCTACCACATCGTTTTAAA
CGAAGTTTTAACATAACATTCCTCTAATTTCATTGCAAAGTGTTATAGGGAATTGATCCAATATGGATGGAATCATGAATAGTCATTAGTTTCGTTTTTT
GTATACTAATTCAAACTTGCTTTGCTATCTATGGAGAAATATGAATAAAAGAAATTAAGTATTTATCGGGAAAGACTCCGCAAAGAGCCAATTTATTTAA
ACCCATATTCTATCATATGAATGAAATATAGTTCGAAAAAAGGGAATAAACAAGTTTGCTTAAGACTTATTTATTATGGAATTTCCATCCTCAACAGAGG
ACTCGAGATGATCAATCCAATCCTGAAATGATAAGAGAAGAATTGACTCTTCTCCAACAAATAAACTATCAACCTCCCGTTTAATTAATTTAATTAATAT
ATTAGATTAGCAATCTATTTTTCCATACCATTTTTCCGTAACAAAACTAATTAACTATTAACTAGTTAAACTATTGCAATGAAAAGAAAGTTTTTTGGTA
GTTATAGAATTCTCGTATTTCTTCGACTTGAATACCAAAAGAAAGAAAAAAATGAAGTAAAAAAAATGCATTTCCTGTAAAGTAAAATTAAGGTCTTTGC
TTTTACTTATTTTTTCTTTTACCTAAAAGAAGCAACTCCAAATCAAAATTGAATCCATTCTATCTAACGAGCAGTTCTTATCTTATCTTTACCGGGATGG
ATCATCTGGATATTTAAAAAATCGCGGATCGAGATCGTTTTCGCTTAACCAAAGAAAGAAAAAGAAGAAGGAACCTTTTTTACTAATAAAATACTATAAA
AAAAATTTATCTCTATCATAAATCTATCTCTACCATAAAGGAATAGGTCTCGTTTTTTATACAATGTTCTACGTCAAGTTTAAAATTTTTTCATGAAAAA
AAGATTTTCAATTTGACTGGACTTGACACTGGATTATGTTTTCTGAGACAGAAAATGAACGCATTAGGACTGCATCGAATCTAAGAGTTTATAAGAGAAA
AAAATTCTCTTTAATAAACTTTATGTCTCGTGCAGAATACAATACGATTTCA