Detailed information on CNT30258856


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696483Avena sativaOryza sativa56.119.6691.49423reverse complement
CNT30393155Avena sativaTriticum turgidum57.9667.5495.19437reverse complement
CNT30440419Avena sativaAegilops tauschii76.7954.6794.13579reverse complement
CNT30665681Avena sativaTriticum dicoccoides54.5146.7695.13411reverse complement
CNT30229322Avena sativaAnanas comosus12.7340.6892.7196forward
CNT3068216Avena sativaLeersia perrieri21.3539.3685.09161forward
CNT30685543Avena sativaTriticum urartu12.3333.9497.8593reverse complement
CNT30371178Avena sativaOryza glumipatula23.8713.7792.78180reverse complement
CNT30148953Avena sativaBrachypodium distachyon52.9282.7890.73399reverse complement
CNT30574605Avena sativaOryza barthii43.3719.2291.44327reverse complement

Expression of CNT30258856

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MSINEICFFCKEINARNSLISIIIDRNSNHFLEPYEEKTSYTFLGGGVVYLHLSQ*

Sequence

>CNT30258856
AAAGGTTAAAATAAGAAAAAAGCCCCATTTTGGAAGATAGGGAAAACTCTTTCAATTAAAAGTATATCAGAATAAATCCTCCTTATTTGATTTCTATAGA
AGAGGGAGATGCTTTATCGAAGGAAATAAGAAAAAAGGCCCCATTTTGGAAGATAGGGAAAACTCTTTCAATTAAAAGTATATCAGAATAAATCCTCCTT
ATTTGATTTCTATAGAAGAGGGAGATGCTTTATCGAAGGAAATAAGAAAAAAGGGTATGTTGCTACTCTTTTGAAAGAAAAAAGAATAGGAATTCCCGAA
GTAATGTCTAAACCCAAGGATTTCACAAATCAAAGATAAAGGATTCCAGAACAAGTAAACACAATTTTCAATTGTCTCAACAGCAGAATTGGATCAGAAT
AAGGAATAAAAGTCAATTCGTTCGAAATGAGACAACGAAAAGAGTTTAGAGACGACTCAAAAATTTTCGAAGTATTTCGCCTTTGAAGTCTGTCAGTCAA
AATTAGCCAACTTGAGTCATGAGTATAAATGAAATTTGTTTTTTCTGTAAGGAAATTAATGCACGTAATAGTCTTATTTCTATTATTATAGACAGAAATT
CGAATCATTTTCTCGAGCCGTATGAGGAGAAAACCTCCTATACGTTTCTAGGGGGGGGCGTTGTTTATCTACATCTATCCCAATAAGCTGTCTATCGAAT
CGTTGCAATTGATGTTCGATCTCGAAGAGAGGGAAGAGATCTTCGAAAAGTGGG