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Detailed information on CNT30392434


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223286Triticum turgidumHordeum vulgare32.0623.2685.87184forward
CNT30142872Triticum turgidumLolium perenne21.4316.5887.8123forward

Expression of CNT30392434

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MERTQSTHIHTHHSLACSEQTGIRKESYKH*

>peptide 2 (49 aa)
KKEKLALRLLLSYHSRWLNIENTTPHTREFTHGAYTKYTHTHPSLASMQ*

>peptide 3 (97 aa)
MAASQKLLSTLSSSSADGSYLAVVAPGVENAPPHAAAARGRRRRRRHRRGRGPSPGEARPPRRPTACPASCAEVGSDRCKNLCHSLVLLPTDKIKCTG

Sequence

>CNT30392434
AAAAAGGAAAAGCTTGCTCTGAGGCTGTTATTGTCTTACCATAGTAGGTGGTTAAACATTGAGAACACCACACCACACACACGAGAATTTACACATGGAG
CGTACACAAAGTACACACATACACACCCATCACTCGCTAGCATGCAGTGAGCAGACCGGGATAAGAAAAGAAAGTTACAAGCACTAGTAGACAGTAGTAC
GAAGCTCAAGACAAACCACATGCAGCCTCGGACGGCAACGTACGCTATGCAGGATTAGATAACCAAAAGAGCAGCAAACATGGCGGCGTCGCAGAAGTTG
TTGAGCACCCTCTCTTCTTCTTCGGCCGACGGCTCTTATTTAGCGGTGGTTGCTCCCGGGGTGGAAAACGCTCCGCCACACGCTGCCGCCGCGCGGGGGC
GTCGACGACGACGGCGTCACCGGCGTGGTCGGGGCCCGTCTCCGGGCGAGGCCCGGCCACCACGTCGTCCCACAGCTTGTCCAGCATCTTGCGCAGAAGT
TGGATCTGATCGGTGCAAGAACTTGTGTCACTCGCTCGTACTACTACCCACCGATAAGATCAAGTGCACTGGCC